RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 DHRS12A0PJE2 317 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 F5H423 210 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-230ENST00000495090 H0YAE9 185 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 TMX2-CTNND1H3BSU7 103 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 CLOCKO15516 846 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 CLPXO76031 633 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 SEC14L2O76054 403 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 GPIP06744 558 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 ATP6V1B2P21281 511 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 JAK1P23458 1154 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 PSMA4P25789 261 aaKnown RBP9.77□□□□□ -0.85
SYNE1-230ENST00000495090 LRPAP1P30533 357 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 TNFAIP2Q03169 654 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 USP10Q14694 798 aaKnown RBP9.77□□□□□ -0.85
SYNE1-230ENST00000495090 SNX17Q15036 470 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 OXA1LQ15070 435 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 TBCELQ5QJ74 424 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 TSTD2Q5T7W7 516 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 MEX3CQ5U5Q3 659 aaKnown RBP9.77□□□□□ -0.85
SYNE1-230ENST00000495090 EGFLAMQ63HQ2 1017 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 EEF1DP3Q658K8 133 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 ZNF773Q6PK81 442 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 DPH6Q7L8W6 267 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 TRIM50Q86XT4 487 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 CNTN4Q8IWV2 1026 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 SCUBE3Q8IX30 993 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 DHRSXQ8N5I4 330 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 CCDC185Q8N715 623 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 SHCBP1Q8NEM2 672 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 ACVR1CQ8NER5 493 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 DNERQ8NFT8 737 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 KCTD4Q8WVF5 259 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.77□□□□□ -0.85
SYNE1-230ENST00000495090 CCDC126Q96EE4 140 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 MYRFLQ96LU7 910 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 CCDC138Q96M89 665 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 MRPL57Q9BQC6 102 aaKnown RBP9.77□□□□□ -0.85
SYNE1-230ENST00000495090 SEZ6LQ9BYH1 1024 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 ACAD9Q9H845 621 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 EML4Q9HC35 981 aaKnown RBP9.77□□□□□ -0.85
SYNE1-230ENST00000495090 PICK1Q9NRD5 415 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 PKD2L2Q9NZM6 624 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 ZNF214Q9UL59 606 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-230ENST00000495090 ACOT9Q9Y305 439 aa9.77□□□□□ -0.85
SYNE1-230ENST00000495090 LTBP4Q8N2S1 1624 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TTC24A2A3L6 582 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 SAC3D1A6NKF1 404 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ACOX3O15254 700 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 MTSS1O43312 755 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 FOXD2O60548 495 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 GABBR2O75899 941 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 FARP2O94887 1054 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 BCL10O95999 233 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ALOX5P09917 674 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CYP2B6P20813 491 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ATP5F1P24539 256 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 RPL10P27635 214 aaKnown RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 MAP4P27816 1152 aaKnown RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 EPHX2P34913 555 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 RXRGP48443 463 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TKTL1P51854 596 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 SLC7A2P52569 658 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 RAB10P61026 200 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 OSTNP61366 133 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 RBP5P82980 135 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ATP1A4Q13733 1029 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CBX2Q14781 532 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 PPP1R26Q5T8A7 1209 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ARHGAP17Q68EM7 881 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 PID1Q7Z2X4 250 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 NT5DC4Q86YG4 428 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 SLC15A4Q8N697 577 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CASP10Q92851 521 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 MOCOSQ96EN8 888 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 MFSD3Q96ES6 412 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 NRBF2Q96F24 287 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 NGLY1Q96IV0 654 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 MAGED4Q96JG8 741 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 SNX27Q96L92 541 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ZNF347Q96SE7 839 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CGREF1Q99674 301 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 NFKBIZQ9BYH8 718 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 PRDM12Q9H4Q4 367 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 IARS2Q9NSE4 1012 aaKnown RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TBC1D13Q9NVG8 400 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 SMPD3Q9NY59 655 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 SPATA7Q9P0W8 599 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ACTR3BQ9P1U1 418 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 PSME2Q9UL46 239 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 RLFQ13129 1914 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 A0A087X1B8 175 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 RNF103-CHMP3A0A140T963 221 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TMEM233B4DJY2 109 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 NCAM2O15394 837 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 STAG3L1P0CL83 205 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 MBL2P11226 248 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ZNF182P17025 639 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 PTPN3P26045 913 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 EIF2B2P49770 351 aaKnown RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ATXN1P54253 815 aaKnown RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms