RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NR2E3Q9Y5X4 410 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 CCDC88AQ3V6T2 1871 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 PSMD12O00232 456 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 MFSD11O43934 449 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 MYO1DO94832 1006 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 PARNO95453 639 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 DDX39BQ13838 428 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 MTX3Q5HYI7 312 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 CMC1Q7Z7K0 106 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 HSPBAP1Q96EW2 488 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 SNX27Q96L92 541 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 RNF145Q96MT1 663 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 RTKNQ9BST9 563 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 PRKD2Q9BZL6 878 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 CLPBQ9H078 707 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 ITGA7Q13683 1181 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 SNX31Q8N9S9 440 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 ATAD1Q8NBU5 361 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 SLC25A23Q9BV35 468 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 AAASQ9NRG9 546 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 DNAJB4Q9UDY4 337 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 A8MX80 341 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 PPEF2O14830 753 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 KPNA1P52294 538 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 SLC5A3P53794 718 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 PLD1Q13393 1074 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 MOGSQ13724 837 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 TRIM25Q14258 630 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 ZIK1Q3SY52 487 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 TAS1R3Q7RTX0 852 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 GLIS1Q8NBF1 620 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 MAGED4Q96JG8 741 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 BBS2Q9BXC9 721 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 ADGRE3Q9BY15 652 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 RNF39Q9H2S5 420 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 ENTPD7Q9NQZ7 604 aa16.44■□□□□ 0.22
CCDC88B-209ENST00000494080 FAM95CA0A1B0GW59 222 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 CCNA2P20248 432 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 IL1R2P27930 398 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 CTBP1Q13363 440 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 EXOC2Q96KP1 924 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 NPAS2Q99743 824 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 SH3GL1Q99961 368 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 NOL11Q9H8H0 719 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 RIC8BQ9NVN3 520 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 PCDHGB4Q9UN71 923 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 PCDHA11Q9Y5I1 949 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 RGS5O15539 181 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 ZBTB48P10074 688 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 DSELQ8IZU8 1212 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 ACMSDQ8TDX5 336 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 KCTD15Q96SI1 283 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 BDH2Q9BUT1 245 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 OSBPL6Q9BZF3 934 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 CIPCQ9C0C6 399 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 FAM50BQ9Y247 325 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 CAB39Q9Y376 341 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 CA9Q16790 459 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 SFT2D3Q587I9 215 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 PACS1Q6VY07 963 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 SYTL2Q9HCH5 934 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 ACSS2Q9NR19 701 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 MYH7BA7E2Y1 1941 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 MATN2O00339 956 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 ATP5C1P36542 298 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 SERPINH1P50454 418 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 UBE3AQ05086 875 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 PRKD1Q15139 912 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 CERCAMQ5T4B2 595 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 SPATA6LQ8N4H0 392 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 KLHL5Q96PQ7 755 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 PCYT2Q99447 389 aa16.43■□□□□ 0.22
CCDC88B-209ENST00000494080 C4BP0C0L5 1744 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 UBR2Q8IWV8 1755 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 CRHR1P34998 444 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 TUFMP49411 452 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 SLC18A1P54219 525 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 SPIDRQ14159 915 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 KCNA10Q16322 511 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 DCLRE1AQ6PJP8 1040 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 PCDH19Q8TAB3 1148 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 PCED1BQ96HM7 432 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 MIPEPQ99797 713 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 KCTD14Q9BQ13 255 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 RAD21L1Q9H4I0 556 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 MYH7P12883 1935 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 CLASP2O75122 1294 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 DUSP11O75319 330 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 CABYRO75952 493 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 FKBP9O95302 570 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 ZNF135P52742 658 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 RAD23AP54725 363 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 HPCAP84074 193 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 IL5RAQ01344 420 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 PCID2Q5JVF3 399 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 ABRAXAS1Q6UWZ7 409 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 FKBP9P1Q75LS8 142 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 OR9Q1Q8NGQ5 310 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 OMDQ99983 421 aa16.42■□□□□ 0.22
CCDC88B-209ENST00000494080 POLR1EQ9GZS1 481 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms