RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CCL5P13501 91 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 HOXD9P28356 352 aaPredicted RBP21.29■■□□□ 1
CCDC88B-208ENST00000492980 CRABP2P29373 138 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 GLRBP48167 497 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 SLC11A2P49281 568 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 IDH3AP50213 366 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 TAS2R39P59534 338 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 ZNF235Q14590 738 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 TBCCQ15814 346 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 LRRC8EQ6NSJ5 796 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 CNSTQ6PJW8 725 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 GPATCH11Q8N954 259 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 OR52K2Q8NGK3 314 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 CALML6Q8TD86 181 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 ZNF599Q96NL3 588 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 GPR78Q96P69 363 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 RNF208Q9H0X6 261 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 TAS2R1Q9NYW7 299 aa21.29■■□□□ 1
CCDC88B-208ENST00000492980 TARM1B6A8C7 271 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 H3BNC9 293 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 HSPA4LO95757 839 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 CCND1P24385 295 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 GNA12Q03113 381 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 TLE2Q04725 743 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 DLG1Q12959 904 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 UBAP2LQ14157 1087 aaKnown RBP21.28■■□□□ 1
CCDC88B-208ENST00000492980 TRIM60Q495X7 471 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 FSTL5Q8N475 847 aaPredicted RBP21.28■■□□□ 1
CCDC88B-208ENST00000492980 ZNF781Q8N8C0 355 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 SCYL1Q96KG9 808 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 PRICKLE1Q96MT3 831 aaPredicted RBP21.28■■□□□ 1
CCDC88B-208ENST00000492980 MAGEH1Q9H213 219 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 ABLIM3O94929 683 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 CDH4P55283 916 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 HTRA3P83110 453 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 POU4F1Q01851 419 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 E2F5Q15329 346 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 ZNF789Q5FWF6 425 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 LIPMQ5VYY2 423 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 DENND1CQ8IV53 801 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 OR7D4Q8NG98 312 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 ZNF461Q8TAF7 563 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 PLD4Q96BZ4 506 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 OMDQ99983 421 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 CDH19Q9H159 772 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 RETREG1Q9H6L5 497 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.28■■□□□ 1
CCDC88B-208ENST00000492980 TAGLN3Q9UI15 199 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 RPL26L1Q9UNX3 145 aaKnown RBP21.28■■□□□ 1
CCDC88B-208ENST00000492980 SORCS3Q9UPU3 1222 aa21.28■■□□□ 1
CCDC88B-208ENST00000492980 APOBEC2Q9Y235 224 aaKnown RBP21.28■■□□□ 1
CCDC88B-208ENST00000492980 PRR5-ARHGAP8B1AHC4 643 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 KLHL2O95198 593 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 CPA2P48052 419 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 LEPRP48357 1165 aaKnown RBP21.27■■□□□ 1
CCDC88B-208ENST00000492980 RPS24P62847 133 aaKnown RBP21.27■■□□□ 1
CCDC88B-208ENST00000492980 ARHGAP8P85298 464 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 IKBKEQ14164 716 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 RBM20Q5T481 1227 aaKnown RBP21.27■■□□□ 1
CCDC88B-208ENST00000492980 ALG1LQ6GMV1 187 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 TEX9Q8N6V9 391 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 NXNL1Q96CM4 212 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 VWCEQ96DN2 955 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 FEM1CQ96JP0 617 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 L3MBTL1Q9Y468 752 aa21.27■■□□□ 1
CCDC88B-208ENST00000492980 A0A087X1B8 175 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 SLC7A4O43246 635 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 LDB2O43679 373 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 KLKB1P03952 638 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 SOD2P04179 222 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 ARSDP51689 593 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 USP4Q13107 963 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 RCN2Q14257 317 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 WASHC2DQ5SRD0 308 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 VWA5B1Q5TIE3 1220 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 CNKSR3Q6P9H4 555 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 IFT43Q96FT9 208 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 MYRFLQ96LU7 910 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 MFSD1Q9H3U5 465 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 TRPM5Q9NZQ8 1165 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 HSFX1Q9UBD0 423 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 XPR1Q9UBH6 696 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 ACTL7AQ9Y615 435 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 STC2O76061 302 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 GM2AP17900 193 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 HLA-DPA1P20036 260 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 MNX1P50219 401 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 PRKAA2P54646 552 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 SWT1Q5T5J6 900 aaKnown RBP21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 GALNT7Q86SF2 657 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 CILP2Q8IUL8 1156 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 GABPB2Q8TAK5 448 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 TOX2Q96NM4 488 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 NDNQ99608 321 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 DENND2DQ9H6A0 471 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 CYP4F11Q9HBI6 524 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 YIPF1Q9Y548 306 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 KCTD3Q9Y597 815 aa21.26■□□□□ 0.99
CCDC88B-208ENST00000492980 CCL22O00626 93 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms