RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 PIH1D1Q9NWS0 290 aaKnown RBP12.87□□□□□ -0.35
NELFE-209ENST00000488426 WNT16Q9UBV4 365 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 CACNA1IQ9P0X4 2223 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 IQANK1A0A1B0GTG1 560 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 FAM237BA0A1B0GVD1 139 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 PMPCBO75439 489 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 USP1O94782 785 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 TCF3P15923 654 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 KRT15P19012 456 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 CD72P21854 359 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 VIPR2P41587 438 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 WNT3AP56704 352 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 DSC2Q02487 901 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 NIPAL4Q0D2K0 466 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 CDH18Q13634 790 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 RNF43Q68DV7 783 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 PGBD5Q8N414 524 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.87□□□□□ -0.35
NELFE-209ENST00000488426 ARRDC2Q8TBH0 407 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 PTCD2Q8WV60 388 aaKnown RBP12.87□□□□□ -0.35
NELFE-209ENST00000488426 CDKL2Q92772 493 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 NXPE3Q969Y0 559 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 RSPRY1Q96DX4 576 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 PSKH2Q96QS6 385 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 SELENOSQ9BQE4 189 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 APOL2Q9BQE5 337 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 MGME1Q9BQP7 344 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 SOX13Q9UN79 622 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 RPS6KL1Q9Y6S9 549 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 SHISA7A6NL88 538 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 SCAMP3O14828 347 aaKnown RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 MMP2P08253 660 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 CES1P23141 567 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 CD86P42081 329 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 MAXP61244 160 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 GRM2Q14416 872 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 CERCAMQ5T4B2 595 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 DENND5AQ6IQ26 1287 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 TRMT10BQ6PF06 316 aaKnown RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 MARK2Q7KZI7 788 aaKnown RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 ALYREFQ86V81 257 aaKnown RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 CTAGE3PQ8IX95 158 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 SRRM1Q8IYB3 904 aaKnown RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 PPM1NQ8N819 430 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 DDI1Q8WTU0 396 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 MRRFQ96E11 262 aaKnown RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 LRRC3BQ96PB8 259 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 TRIM56Q9BRZ2 755 aaKnown RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 KIFC1Q9BW19 673 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 CINPQ9BW66 212 aaPredicted RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 FOXQ1Q9C009 403 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 MRM3Q9HC36 420 aaKnown RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 TDP1Q9NUW8 608 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 MTF2Q9Y483 593 aaPredicted RBP12.86□□□□□ -0.35
NELFE-209ENST00000488426 OR51B4Q9Y5P0 310 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 FRYLO94915 3013 aa12.86□□□□□ -0.35
NELFE-209ENST00000488426 NUP210Q8TEM1 1887 aaPredicted RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 CBX4O00257 560 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 STK25O00506 426 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 ATP9BO43861 1147 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 CYBBP04839 570 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 BRAFP15056 766 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 GLULP15104 373 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 AOC1P19801 751 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 GNGT1P63211 74 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 MGAT5Q09328 741 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 ANKRD20A4Q4UJ75 823 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 PCID2Q5JVF3 399 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 LGSNQ5TDP6 509 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 MFN1Q8IWA4 741 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 DCAF4L2Q8NA75 395 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.85□□□□□ -0.35
NELFE-209ENST00000488426 TTC16Q8NEE8 873 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 USP13Q92995 863 aaPredicted RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 ZNF669Q96BR6 464 aaPredicted RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 CENPTQ96BT3 561 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 ASB16Q96NS5 453 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 SEMA3CQ99985 751 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 FEM1AQ9BSK4 669 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 TBC1D17Q9HA65 648 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 SSU72Q9NP77 194 aaKnown RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 SLC2A4RGQ9NR83 387 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 GDE1Q9NZC3 331 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 FAM169AQ9Y6X4 670 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 SRRM3A6NNA2 597 aaPredicted RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 CXorf49A8MYA2 514 aaPredicted RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 ZMPSTE24O75844 475 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 KRT37O76014 449 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 EPOP01588 193 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 DCNP07585 359 aaKnown RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 GLDCP23378 1020 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 HOXD11P31277 338 aaPredicted RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 SERPINB9P50453 376 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 CLCN5P51795 746 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 GUCY1A3Q02108 690 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 USP4Q13107 963 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 INO80DQ53TQ3 878 aaPredicted RBP12.85□□□□□ -0.35
NELFE-209ENST00000488426 FSCBQ5H9T9 825 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 LEKR1Q6ZMV7 388 aa12.85□□□□□ -0.35
NELFE-209ENST00000488426 KIAA1958Q8N8K9 716 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms