RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 HEMGNQ9BXL5 484 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 IKZF4Q9H2S9 585 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 MUC13Q9H3R2 512 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 MPP6Q9NZW5 540 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 UPB1Q9UBR1 384 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 PCDHGB4Q9UN71 923 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 LYVE1Q9Y5Y7 322 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SIRT4Q9Y6E7 314 aaPredicted RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 KCNE2Q9Y6J6 123 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 MEGF6O75095 1541 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SLIT2O94813 1529 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 OVOS2A0A0G2JMS6 1433 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SPATA31A5Q5VU36 1347 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 SPATA31A7Q8IWB4 1347 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 TCRBV7S3A2A0A539 114 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 VILLO15195 856 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 NARSO43776 548 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 STRNO43815 780 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 PLOD3O60568 738 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 HNRNPCL1O60812 293 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 GJB3O75712 270 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 BCAR3O75815 825 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 CBX6O95503 412 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 TUBB4AP04350 444 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 ENO1P06733 434 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 ATF7P17544 494 aaPredicted RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 DRD4P21917 467 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 TGM2P21980 687 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 TYK2P29597 1187 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 GJC1P36383 396 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 MPLP40238 635 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 EIF3BP55884 814 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 RRP1P56182 461 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 SNX16P57768 344 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 RPL7AP62424 266 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 DPTQ07507 201 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 TEFQ10587 303 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 CHAF1BQ13112 559 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 SLC14A1Q13336 389 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 KPNB1Q14974 876 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 ALDH1L2Q3SY69 923 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 ANXA2RQ3ZCQ2 193 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 FAM153CQ494X1 144 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 GLE1Q53GS7 698 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 AWAT1Q58HT5 328 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 TMEM81Q6P7N7 255 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 VSTM1Q6UX27 236 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 RANBP10Q6VN20 620 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 ZNF804AQ7Z570 1209 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 UNC5CLQ8IV45 518 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 RPAP2Q8IXW5 612 aaPredicted RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 SRBD1Q8N5C6 995 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 C8orf58Q8NAV2 365 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 SETD9Q8NE22 299 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 DNAAF1Q8NEP3 725 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 FAM120BQ96EK7 910 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 DAZAP1Q96EP5 407 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 HIC2Q96JB3 615 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 CADM1Q9BY67 442 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 NUAK2Q9H093 628 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 CYP4F11Q9HBI6 524 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 ARL8BQ9NVJ2 186 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 TMEM248Q9NWD8 314 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 HCFC1R1Q9NWW0 138 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 MIS18AQ9NYP9 233 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 BCCIPQ9P287 314 aaKnown RBP eCLIP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 LIMA1Q9UHB6 759 aaKnown RBP4.28□□□□□ -1.72
PTCD3-216ENST00000487043 TSPYL4Q9UJ04 414 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 RPS6KA6Q9UK32 745 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 FBXO4Q9UKT5 387 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 NWD2Q9ULI1 1742 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 ADAMTS7Q9UKP4 1686 aa4.28□□□□□ -1.72
PTCD3-216ENST00000487043 SOS1Q07889 1333 aaPredicted RBP4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PCDH11XQ9BZA7 1347 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PCDH11YQ9BZA8 1340 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PKD1L3Q7Z443 1732 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PARP4Q9UKK3 1724 aaKnown RBP4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PLCH1Q4KWH8 1693 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 BCL9LQ86UU0 1499 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 FAM237BA0A1B0GVD1 139 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 ERVV-2B6SEH9 535 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 SNAP23O00161 211 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 LDLRAD4O15165 306 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 P4HA2O15460 535 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 TACC1O75410 805 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 TSPAN9O75954 239 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 SEC14L2O76054 403 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 ESRRBO95718 433 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 GALTP07902 379 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 RARGP13631 454 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 ADRA1BP35368 520 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 IDUAP35475 653 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PPARGP37231 505 aaPredicted RBP4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PBX3P40426 434 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 AVPR1BP47901 424 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 NLRP5P59047 1200 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 LARS2Q15031 903 aaKnown RBP4.27□□□□□ -1.73
PTCD3-216ENST00000487043 CCDC96Q2M329 555 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 TWISTNBQ3B726 338 aaPredicted RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms