RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZNF479Q96JC4 524 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 YME1L1Q96TA2 773 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 HIPK2Q9H2X6 1198 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 WASH6PQ9NQA3 447 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 ANKRD10Q9NXR5 420 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 IL1RAPL1Q9NZN1 696 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 PEMTQ9UBM1 199 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 WNT16Q9UBV4 365 aa6.22□□□□□ -1.41
USP40-213ENST00000483216 SLC25A10Q9UBX3 287 aaPredicted RBP6.22□□□□□ -1.41
USP40-213ENST00000483216 CARMIL1Q5VZK9 1371 aa6.21□□□□□ -1.41
USP40-213ENST00000483216 ABCA10Q8WWZ4 1543 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 IGKV2D-30A0A075B6S6 120 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 URODP06132 367 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 HNRNPA1P09651 372 aaKnown RBP eCLIP6.21□□□□□ -1.42
USP40-213ENST00000483216 ZNF8P17098 575 aaPredicted RBP6.21□□□□□ -1.42
USP40-213ENST00000483216 MYF6P23409 242 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 NUDT6P53370 316 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 CRYZQ08257 329 aaKnown RBP6.21□□□□□ -1.42
USP40-213ENST00000483216 ST3GAL1Q11201 340 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 CAPSQ13938 189 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 CAMK1Q14012 370 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 ERV3-1Q14264 604 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 SHBQ15464 509 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 FAM160B2Q86V87 743 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 GPT2Q8TD30 523 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 UBE2Q2Q8WVN8 375 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 HTRA1Q92743 480 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 ZBTB10Q96DT7 871 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 PHF21BQ96EK2 531 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 TBATAQ96M53 351 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 ZPBPQ9BS86 351 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 PGAP2Q9UHJ9 254 aa6.21□□□□□ -1.42
USP40-213ENST00000483216 LOC102724159A0A0B4J2E5 919 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 ITM2AO43736 263 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 GLUD1P00367 558 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 NGFRP08138 427 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 T-ENOLP0DO92 83 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 ITGB6P18564 788 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 DEKP35659 375 aaKnown RBP6.2□□□□□ -1.42
USP40-213ENST00000483216 GLUD2P49448 558 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 PCYT1AP49585 367 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 EFNB1P98172 346 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 KRTAP1-1Q07627 177 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 MYBPC2Q14324 1141 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 PWP2Q15269 919 aaKnown RBP6.2□□□□□ -1.42
USP40-213ENST00000483216 BAK1Q16611 211 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 TDRD12Q587J7 1177 aaKnown RBP6.2□□□□□ -1.42
USP40-213ENST00000483216 ZNF667Q5HYK9 610 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 C8orf82Q6P1X6 216 aaPredicted RBP6.2□□□□□ -1.42
USP40-213ENST00000483216 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.2□□□□□ -1.42
USP40-213ENST00000483216 PLD5Q8N7P1 536 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 ELP5Q8TE02 316 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 THOC3Q96J01 351 aaKnown RBP6.2□□□□□ -1.42
USP40-213ENST00000483216 BABAM1Q9NWV8 329 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 PPP1R14DQ9NXH3 145 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 NDRG3Q9UGV2 375 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 GTF2A1LQ9UNN4 478 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 POLA1P09884 1462 aaPredicted RBP6.2□□□□□ -1.42
USP40-213ENST00000483216 ARHGAP35Q9NRY4 1499 aa6.2□□□□□ -1.42
USP40-213ENST00000483216 IGHV4-28A0A0C4DH34 117 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 LACTBL1A8MY62 500 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 KDM4EB2RXH2 506 aaPredicted RBP6.19□□□□□ -1.42
USP40-213ENST00000483216 SLC2A4P14672 509 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 XBP1P17861 261 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 AMTP48728 403 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 TRAF2Q12933 501 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 TDGQ13569 410 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 GPR68Q15743 365 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 SLC22A25Q6T423 547 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 TADA2BQ86TJ2 420 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 MIGA1Q8NAN2 632 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 C11orf65Q8NCR3 313 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 ADAMTS14Q8WXS8 1223 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 APOPT1Q96IL0 206 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 TTYH1Q9H313 450 aaPredicted RBP6.19□□□□□ -1.42
USP40-213ENST00000483216 CLK4Q9HAZ1 481 aaKnown RBP6.19□□□□□ -1.42
USP40-213ENST00000483216 KIAA1456Q9P272 454 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.19□□□□□ -1.42
USP40-213ENST00000483216 SLC45A1Q9Y2W3 748 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 CUL7Q14999 1698 aa6.19□□□□□ -1.42
USP40-213ENST00000483216 WDR97A6NE52 1622 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 RAD54L2Q9Y4B4 1467 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 TYW5A2RUC4 315 aaKnown RBP6.18□□□□□ -1.42
USP40-213ENST00000483216 SRD5A1P18405 259 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 TKTP29401 623 aaKnown RBP6.18□□□□□ -1.42
USP40-213ENST00000483216 CXCR3P49682 368 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 RPP30P78346 268 aaKnown RBP6.18□□□□□ -1.42
USP40-213ENST00000483216 ZXDBP98169 803 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 LTBQ06643 244 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 SERTAD4-AS1Q5TG53 156 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 TMEM81Q6P7N7 255 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 TBC1D26Q86UD7 250 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 SFTPA2Q8IWL1 248 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 ESX1Q8N693 406 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 OTULINQ96BN8 352 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 SNTG1Q9NSN8 517 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 SELENONQ9NZV5 590 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 CKAP5Q14008 2032 aa6.18□□□□□ -1.42
USP40-213ENST00000483216 EVPLQ92817 2033 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 TNPO2O14787 897 aaKnown RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms