RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 N4BP2L1Q5TBK1 243 aaPredicted RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 DCAF12L1Q5VU92 463 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 RNF219Q5W0B1 726 aaPredicted RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 ZNF776Q68DI1 518 aaPredicted RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 SASS6Q6UVJ0 657 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 FAM124AQ86V42 546 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 CACUL1Q86Y37 369 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 HDDC3Q8N4P3 179 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 ZNF366Q8N895 744 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 KDM1BQ8NB78 822 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 ANKRD20A12PQ8NF67 263 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 DNASE2BQ8WZ79 361 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 DACT3Q96B18 629 aaPredicted RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 C18orf8Q96DM3 657 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 PRMT1Q99873 361 aaKnown RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 GTPBP2Q9BX10 602 aaKnown RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 GPR174Q9BXC1 333 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 NAA15Q9BXJ9 866 aaKnown RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 STK33Q9BYT3 514 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 CAPN10Q9HC96 672 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 ANO10Q9NW15 660 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 TMEM51Q9NW97 253 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7□□□□□ -1.29
CCDC88A-213ENST00000476903 COX16Q9P0S2 106 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 INTS6Q9UL03 887 aaKnown RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 STAP1Q9ULZ2 295 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 SCML1Q9UN30 329 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 DAAM1Q9Y4D1 1078 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 TMEM131Q92545 1883 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 ITIH6Q6UXX5 1313 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 A0A1B0GTW7 788 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 A0A1B0GVM2 712 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 M0QYT0 321 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 OPHN1O60890 802 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 RNASEH1O60930 286 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 MBD3O95983 291 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 F9P00740 461 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 CEACAM1P13688 526 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 CSRP1P21291 193 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 NNMTP40261 264 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 GABRB2P47870 512 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 RNASE9P60153 205 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 RPS14P62263 151 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 MYL5Q02045 173 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 SULT2A1Q06520 285 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 EGR3Q06889 387 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 AUHQ13825 339 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 KRT31Q15323 416 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 STX1AQ16623 288 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 HNRNPA1L2Q32P51 320 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 BRMS1LQ5PSV4 323 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 ACBD5Q5T8D3 534 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 FAM102AQ5T9C2 384 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 TAF3Q5VWG9 929 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 FBXL22Q6P050 247 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 LRSAM1Q6UWE0 723 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 MMS22LQ6ZRQ5 1243 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 SND1Q7KZF4 910 aaKnown RBP eCLIP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 NOP9Q86U38 636 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 ERICH1Q86X53 443 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 CIR1Q86X95 450 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 ZNF677Q86XU0 584 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 MRPL41Q8IXM3 137 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 CCAR2Q8N163 923 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 OXR1Q8N573 874 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 MINDY1Q8N5J2 469 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 PGAP3Q96FM1 320 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 MRGPRX3Q96LB0 322 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 RPRD1AQ96P16 312 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 PPP1R9BQ96SB3 815 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 ZDHHC5Q9C0B5 715 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 BTBD1Q9H0C5 482 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 MIR1-1HGQ9H1L0 117 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 RSPH9Q9H1X1 276 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 VPS16Q9H269 839 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 GANQ9H2C0 597 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC32A1Q9H598 525 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 WDCPQ9H6R7 721 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 FSCN3Q9NQT6 498 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 FAM207AQ9NSI2 230 aaPredicted RBP6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 FANCLQ9NW38 375 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 ANGPTL2Q9UKU9 493 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 ERVW-1Q9UQF0 538 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 NCKAP1Q9Y2A7 1128 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 PAXBP1Q9Y5B6 917 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 HS3ST4Q9Y661 456 aa6.99□□□□□ -1.29
CCDC88A-213ENST00000476903 TPRP12270 2363 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 PLXNA2O75051 1894 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 EDDM13A0A1B0GTR0 161 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 TARSL2A2RTX5 802 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 NOTOA8MTQ0 251 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 TTC34A8MYJ7 566 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 UPK3BL1B0FP48 263 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 UPK3BL2E5RIL1 263 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 GIPC1O14908 333 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 BCAT2O15382 392 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 CLDN11O75508 207 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 GFPT2O94808 682 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SEMA4FO95754 770 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms