RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ARSIQ5FYB1 569 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 FAM26FQ5R3K3 315 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 BSPRYQ5W0U4 402 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 SPECC1LQ69YQ0 1117 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 SPOPLQ6IQ16 392 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 MSANTD2Q6P1R3 559 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 RD3Q7Z3Z2 195 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 VPS36Q86VN1 386 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 KCNMB4Q86W47 210 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 IQCKQ8N0W5 287 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 NAGSQ8N159 534 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 SH2D3CQ8N5H7 860 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ESX1Q8N693 406 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 TP53I13Q8NBR0 393 aaPredicted RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 ACBD4Q8NC06 268 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 GALNT6Q8NCL4 622 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 DENND6BQ8NEG7 585 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 FAM46DQ8NEK8 389 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 TMIEQ8NEW7 156 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 OR1E3Q8WZA6 343 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 WASF1Q92558 559 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 RAD54LQ92698 747 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ERCC4Q92889 916 aaPredicted RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 CCDC127Q96BQ5 260 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 DNAJC19Q96DA6 116 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 TEFMQ96QE5 360 aaKnown RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 ACCSQ96QU6 501 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 TMEM121Q9BTD3 319 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 DUSP16Q9BY84 665 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 IRX2Q9BZI1 471 aaPredicted RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 ING2Q9H160 280 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 MCCC2Q9HCC0 563 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 NDFIP2Q9NV92 336 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 SIDT1Q9NXL6 827 aaKnown RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 AKAP7Q9P0M2 348 aaPredicted RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 R3HCC1Q9Y3T6 440 aaKnown RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 ZNF451Q9Y4E5 1061 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 PCDHB3Q9Y5E6 796 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 PCDHGA6Q9Y5G7 932 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 ST14Q9Y5Y6 855 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 CYP46A1Q9Y6A2 500 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 SONP18583 2426 aaKnown RBP4.87□□□□□ -1.63
USP4-209ENST00000475873 ANKRD36A6QL64 1941 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 PKD1L1Q8TDX9 2849 aa4.87□□□□□ -1.63
USP4-209ENST00000475873 TGP01266 2768 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 IGHV1OR21-1A0A087WYE8 117 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 PPM1DO15297 605 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 AP1G1O43747 822 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 SNAP91O60641 907 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 LRCH4O75427 683 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 LEFTY1O75610 366 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 RASGRP1O95267 797 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ZBED1O96006 694 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ZNF18P17022 549 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 TNNI1P19237 187 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ITIH2P19823 946 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 RRM1P23921 792 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ATICP31939 592 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ABCD1P33897 745 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 TKTL1P51854 596 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 NEK3P51956 506 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 IST1P53990 364 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 SRP54P61011 504 aaKnown RBP4.86□□□□□ -1.63
USP4-209ENST00000475873 YPEL5P62699 121 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 PTK2Q05397 1052 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 INCA1Q0VD86 236 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 SQSTM1Q13501 440 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 DNASE1L3Q13609 305 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 AAMPQ13685 434 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 RAPSNQ13702 412 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ELOAQ14241 798 aaKnown RBP4.86□□□□□ -1.63
USP4-209ENST00000475873 IRF4Q15306 451 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ME3Q16798 604 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ZNF667Q5HYK9 610 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 LRRC73Q5JTD7 316 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 FAM69BQ5VUD6 431 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ANKRD40Q6AI12 368 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 DTHD1Q6ZMT9 781 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 DPY19L3Q6ZPD9 716 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ARHGAP22Q7Z5H3 698 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 CUZD1Q86UP6 607 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 GKN2Q86XP6 184 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 NRROSQ86YC3 692 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 LGI2Q8N0V4 545 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 ZNF557Q8N988 423 aaPredicted RBP4.86□□□□□ -1.63
USP4-209ENST00000475873 CCDC112Q8NEF3 446 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 CT55Q8WUE5 264 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 SCG3Q8WXD2 468 aaKnown RBP4.86□□□□□ -1.63
USP4-209ENST00000475873 ASB12Q8WXK4 309 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 RELTQ969Z4 430 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 SYAP1Q96A49 352 aaPredicted RBP4.86□□□□□ -1.63
USP4-209ENST00000475873 SLC39A13Q96H72 371 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 CCDC120Q96HB5 630 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 FEM1CQ96JP0 617 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 PSMB7Q99436 277 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 SMAD5Q99717 465 aaKnown RBP4.86□□□□□ -1.63
USP4-209ENST00000475873 RAB34Q9BZG1 259 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 TMEM168Q9H0V1 697 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 TNKS2Q9H2K2 1166 aa4.86□□□□□ -1.63
USP4-209ENST00000475873 FOXP1Q9H334 677 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms