RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 PCDHB1Q9Y5F3 818 aa9.24□□□□□ -0.93
SF3A1-206ENST00000471037 HS3ST4Q9Y661 456 aa9.24□□□□□ -0.93
SF3A1-206ENST00000471037 SYNJ2BP-COX16A0A087WUM0 186 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 LY6G6EA0A0G2JKS1 128 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 KPNA3O00505 521 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 RIOK3O14730 519 aaKnown RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 SLC31A1O15431 190 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 BUB1BO60566 1050 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 PAGE1O75459 146 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 PALMO75781 387 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 PROSCO94903 275 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 GJB6O95452 261 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 MT-CO1P00395 513 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 PRNPP04156 253 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 ALPPL2P10696 532 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 PRLRP16471 622 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 PSMA2P25787 234 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 SDC4P31431 198 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 AKT2P31751 481 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 CHRNA3P32297 505 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 LSSP48449 732 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 ZNF143P52747 638 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 ERVPABLB-1P60509 514 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 GNG11P61952 73 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 RHDQ02161 417 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 CFHR1Q03591 330 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 MESDQ14696 234 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 TMEM259Q4ZIN3 620 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 OTUD1Q5VV17 481 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 IGF2-ASQ6U949 168 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 GCNT7Q6ZNI0 430 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 SLFN11Q7Z7L1 901 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 C14orf80Q86SX3 495 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 ZNF605Q86T29 641 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 DAAM2Q86T65 1068 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 SLC22A18ASQ8N1D0 253 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 LRRC57Q8N9N7 239 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 DCAF4L2Q8NA75 395 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 JOSD2Q8TAC2 188 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 SNRNP27Q8WVK2 155 aaKnown RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 ARRDC3Q96B67 414 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 APOLD1Q96LR9 279 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 C16orf45Q96MC5 204 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 PSMB7Q99436 277 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 MYOCQ99972 504 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 CNPY3Q9BT09 278 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 DUSP23Q9BVJ7 150 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 CALN1Q9BXU9 219 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 HDAC8Q9BY41 377 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 MUC3BQ9H195 1237 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 FZD3Q9NPG1 666 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 TMEM51Q9NW97 253 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 RRN3Q9NYV6 651 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 COX16Q9P0S2 106 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 VPS51Q9UID3 782 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 STAP1Q9ULZ2 295 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 ZFR2Q9UPR6 939 aaKnown RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 FARP1Q9Y4F1 1045 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-206ENST00000471037 U3KQA8 63 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 CFAP46Q8IYW2 2715 aa9.23□□□□□ -0.93
SF3A1-206ENST00000471037 FLNBO75369 2602 aaKnown RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 ZNF462Q96JM2 2506 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 NEMP2A6NFY4 417 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 A6NNZ2 444 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 SCAMP1O15126 338 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 FFAR2O15552 330 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 SMAD6O43541 496 aaKnown RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 BNIP3LO60238 219 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 SNAP91O60641 907 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 USP12O75317 370 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 GRAP2O75791 330 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 RNF8O76064 485 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 CNTN5O94779 1100 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 MPOP05164 745 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 RHOCP08134 193 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 TNNT1P13805 278 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 NOS2P35228 1153 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 FLT3P36888 993 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 GGCXP38435 758 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 PTPN9P43378 593 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 DUSP3P51452 185 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 TMPRSS3P57727 454 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 RNASE9P60153 205 aaKnown RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 HNRNPKP61978 463 aaKnown RBP eCLIP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 GABREP78334 506 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 OGDHQ02218 1023 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 NME3Q13232 169 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 SLC25A52Q3SY17 297 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 ALFQ53S48 1182 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 ACBD5Q5T8D3 534 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 C22orf39Q6P5X5 142 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 KYAT3Q6YP21 454 aaKnown RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 ERN2Q76MJ5 926 aaKnown RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 SETD3Q86TU7 594 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 DCP2Q8IU60 420 aaKnown RBP9.22□□□□□ -0.93
SF3A1-206ENST00000471037 ZNF683Q8IZ20 524 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 SLC35F6Q8N357 371 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 EMC1Q8N766 993 aa9.22□□□□□ -0.93
SF3A1-206ENST00000471037 ATP11CQ8NB49 1132 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms