RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 GNLYP22749 145 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 AKT2P31751 481 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 AFMP43652 599 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 GCLMP48507 274 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 TBX4P57082 545 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 DAOAP59103 153 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 HNRNPKP61978 463 aaKnown RBP eCLIP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 PWP1Q13610 501 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 CDH18Q13634 790 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 PDE1CQ14123 709 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SPIDRQ14159 915 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 C16orf72Q14CZ0 275 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 NR0B2Q15466 257 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 DLG2Q15700 870 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 GOLGA7BQ2TAP0 167 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 MPP7Q5T2T1 576 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 RAP1GAP2Q684P5 730 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 ARHGAP17Q68EM7 881 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 CXorf57Q6NSI4 855 aaKnown RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 MSANTD2Q6P1R3 559 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 C12orf56Q8IXR9 622 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 GRAMD1CQ8IYS0 662 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 ARHGAP18Q8N392 663 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 IL22RA1Q8N6P7 574 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 ANKRD52Q8NB46 1076 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 KDM1BQ8NB78 822 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 KYQ8NBH2 561 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 HJURPQ8NCD3 748 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 RNF139Q8WU17 664 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 RNF31Q96EP0 1072 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 EEF2KMTQ96G04 330 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SLC39A13Q96H72 371 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SPAG5Q96R06 1193 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 ZSWIM1Q9BR11 485 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 LRRC61Q9BV99 259 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 DUSP23Q9BVJ7 150 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 UBXN6Q9BZV1 441 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 ZNF768Q9H5H4 540 aaKnown RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SOX17Q9H6I2 414 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 USP29Q9HBJ7 922 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SRA1Q9HD15 236 aaKnown RBP5.4□□□□□ -1.54
PTPN4-209ENST00000469511 CISHQ9NSE2 258 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 KBTBD4Q9NVX7 518 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 SIRPGQ9P1W8 387 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 TSPAN16Q9UKR8 245 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 PADI4Q9UM07 663 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 NAALADL1Q9UQQ1 740 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 LOXL2Q9Y4K0 774 aa5.4□□□□□ -1.54
PTPN4-209ENST00000469511 DIDO1Q9BTC0 2240 aaKnown RBP5.4□□□□□ -1.55
PTPN4-209ENST00000469511 D6RAR5 112 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 KPNA3O00505 521 aaPredicted RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 XPO1O14980 1071 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 MCF2LO15068 1137 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 NVLO15381 856 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 SLC7A4O43246 635 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 SNAP91O60641 907 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 FBXO24O75426 580 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ENDOD1O94919 500 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CLDN1O95832 211 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 RPN1P04843 607 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 RPLP0P05388 317 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 SFTPCP11686 197 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 P4HA1P13674 534 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 LIFP15018 202 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 TSHRP16473 764 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 HOXB4P17483 251 aaPredicted RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ITIH2P19823 946 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 TACR2P21452 398 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 RRM1P23921 792 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 DCTP40126 519 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CD97P48960 835 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 INHBCP55103 352 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ZNF445P59923 1031 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 RPS26P62854 115 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ZFP36L1Q07352 338 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 STK4Q13043 487 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CUL4BQ13620 913 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 KNOP1Q1ED39 458 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ZC3H12AQ5D1E8 599 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 PRRT3Q5FWE3 981 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ATP1A1-AS1Q5TC04 95 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 SYPL2Q5VXT5 272 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 RNF219Q5W0B1 726 aaPredicted RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ZNF385CQ66K41 422 aaPredicted RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 PMF1Q6P1K2 205 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 BORAQ6PGQ7 559 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CCDC73Q6ZRK6 1079 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CCAR2Q8N163 923 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 Q8N9G6 341 aaPredicted RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 KIAA0895Q8NCT3 520 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 OR2A12Q8NGT7 310 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 DQX1Q8TE96 717 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 OR8D1Q8WZ84 308 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 TFAP2BQ92481 460 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 TAF4BQ92750 862 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 NKD1Q969G9 470 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 DHX58Q96C10 678 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 GRAMD1AQ96CP6 724 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 TMX3Q96JJ7 454 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 GFM1Q96RP9 751 aaKnown RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms