RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 NEU3Q9UQ49 428 aa17.73■□□□□ 0.43
COL7A1-206ENST00000466591 SCINQ9Y6U3 715 aa17.73■□□□□ 0.43
COL7A1-206ENST00000466591 FAM208BQ5VWN6 2430 aa17.73■□□□□ 0.43
COL7A1-206ENST00000466591 CFAP47Q6ZTR5 3102 aa17.73■□□□□ 0.43
COL7A1-206ENST00000466591 TRPM6Q9BX84 2022 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 GOLGA4Q13439 2230 aaKnown RBP17.72■□□□□ 0.43
COL7A1-206ENST00000466591 EIF3CLB5ME19 914 aaKnown RBP17.72■□□□□ 0.43
COL7A1-206ENST00000466591 LZTS3O60299 673 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-206ENST00000466591 PALMO75781 387 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 PIGNO95427 931 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 ANXA6P08133 673 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 CTSEP14091 401 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 HTR1BP28222 390 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 SUOXP51687 545 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 NDST2P52849 883 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 KLHL30Q0D2K2 578 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 CDKN3Q16667 212 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 KLHL40Q2TBA0 621 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 DEFB133Q30KQ1 61 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 PRRT3Q5FWE3 981 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 ARTNQ5T4W7 220 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 CAVIN1Q6NZI2 390 aaKnown RBP17.72■□□□□ 0.43
COL7A1-206ENST00000466591 UMODL1-AS1Q8N2C9 162 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 SCG3Q8WXD2 468 aaKnown RBP17.72■□□□□ 0.43
COL7A1-206ENST00000466591 ASB12Q8WXK4 309 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 ZNF653Q96CK0 615 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 TRIM11Q96F44 468 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 EIF3CQ99613 913 aaKnown RBP17.72■□□□□ 0.43
COL7A1-206ENST00000466591 HAUS4Q9H6D7 363 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 MYO1AQ9UBC5 1043 aa17.72■□□□□ 0.43
COL7A1-206ENST00000466591 CNOT8Q9UFF9 292 aaKnown RBP17.72■□□□□ 0.43
COL7A1-206ENST00000466591 DOCK9Q9BZ29 2069 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 WASH4PA8MWX3 477 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 TEX33O43247 280 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 OPA1O60313 960 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 MYF5P13349 255 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 SERPINA4P29622 427 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 ZNF165P49910 485 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 BLKP51451 505 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 YPEL5P62699 121 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 MAMLD1Q13495 774 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 LRRC14Q15048 493 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 NR0B2Q15466 257 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 TDRD12Q587J7 1177 aaKnown RBP17.71■□□□□ 0.43
COL7A1-206ENST00000466591 ERMARDQ5T6L9 678 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 PHACTR4Q8IZ21 702 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 ATL2Q8NHH9 583 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 KLF6Q99612 283 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-206ENST00000466591 BPIFA3Q9BQP9 254 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.71■□□□□ 0.43
COL7A1-206ENST00000466591 KLC2Q9H0B6 622 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 SUV39H2Q9H5I1 410 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 ATP13A3Q9H7F0 1226 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 MRPL47Q9HD33 250 aaKnown RBP17.71■□□□□ 0.43
COL7A1-206ENST00000466591 RTN4Q9NQC3 1192 aaKnown RBP17.71■□□□□ 0.43
COL7A1-206ENST00000466591 TAS2R14Q9NYV8 317 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 DKK3Q9UBP4 350 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 MFHAS1Q9Y4C4 1052 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 CSNK1G3Q9Y6M4 447 aa17.71■□□□□ 0.43
COL7A1-206ENST00000466591 ADAMTS20P59510 1910 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 INSIG1O15503 277 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 BRINP1O60477 761 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 FTLP02792 175 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-206ENST00000466591 GP1BAP07359 652 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 EIF4A3P38919 411 aaKnown RBP17.7■□□□□ 0.42
COL7A1-206ENST00000466591 PAPOLAP51003 745 aaKnown RBP17.7■□□□□ 0.42
COL7A1-206ENST00000466591 PPARDQ03181 441 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 C1orf61Q13536 156 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 PPP1R15BQ5SWA1 713 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 ESRP1Q6NXG1 681 aaKnown RBP17.7■□□□□ 0.42
COL7A1-206ENST00000466591 EFL1Q7Z2Z2 1120 aaKnown RBP17.7■□□□□ 0.42
COL7A1-206ENST00000466591 RD3Q7Z3Z2 195 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 IRF2BP2Q7Z5L9 587 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 DCBLD1Q8N8Z6 715 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 FAM181AQ8N9Y4 354 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 RFFLQ8WZ73 363 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 CPEB1Q9BZB8 566 aaKnown RBP17.7■□□□□ 0.42
COL7A1-206ENST00000466591 NOL6Q9H6R4 1146 aaKnown RBP17.7■□□□□ 0.42
COL7A1-206ENST00000466591 ZWILCHQ9H900 591 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 COQ6Q9Y2Z9 468 aa17.7■□□□□ 0.42
COL7A1-206ENST00000466591 WDFY3Q8IZQ1 3526 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 CHD6Q8TD26 2715 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 SPEGQ15772 3267 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 PKD1L2Q7Z442 2459 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 TDRD6O60522 2096 aaKnown RBP17.69■□□□□ 0.42
COL7A1-206ENST00000466591 A0A087WV48 116 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 TCRBV5S1A1TA0A578 114 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 J3KR12 359 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 TOR1BO14657 336 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 RIOK3O14730 519 aaKnown RBP17.69■□□□□ 0.42
COL7A1-206ENST00000466591 AREL1O15033 823 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 MUSKO15146 869 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 USP12O75317 370 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 CSO75390 466 aaKnown RBP17.69■□□□□ 0.42
COL7A1-206ENST00000466591 MYBL1P10243 752 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 TIMP2P16035 220 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 IGFALSP35858 605 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 ARL4AP40617 200 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 ADKP55263 362 aaKnown RBP17.69■□□□□ 0.42
COL7A1-206ENST00000466591 PFN3P60673 137 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms