RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 SYT12Q8IV01 421 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 GRIN2DO15399 1336 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 UBOX5O94941 541 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 SLC6A4P31645 630 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 NR2C2P49116 596 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 SEC24CP53992 1094 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 CDH11P55287 796 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 PLEKHG4Q58EX7 1191 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 MSANTD2Q6P1R3 559 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 USP43Q70EL4 1123 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 CCDC28AQ8IWP9 274 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 FEZF2Q8TBJ5 459 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 RNPEPL1Q9HAU8 725 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 E2F8A0AVK6 867 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ANXA2P2A6NMY6 339 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 TM7SF2O76062 418 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 PDYNP01213 254 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ANXA2P07355 339 aaKnown RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 ATP1A3P13637 1013 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 SERPINA4P29622 427 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 OVGP1Q12889 678 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 GPR107Q5VW38 600 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 FAM98AQ8NCA5 519 aaKnown RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 VCPIP1Q96JH7 1222 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 MARK4Q96L34 752 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 USP19O94966 1318 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ABCA1O95477 2261 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 H7C4K7 107 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 M0QX08 132 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 GNB3P16520 340 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 VAMP1P23763 118 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 PUM1Q14671 1186 aaKnown RBP eCLIP9□□□□□ -0.979e-7■□□□□ 9.3
NIPBL-202ENST00000448238 PDK3Q15120 406 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 GARNL3Q5VVW2 1013 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF772Q68DY9 489 aaPredicted RBP9□□□□□ -0.97
NIPBL-202ENST00000448238 RASGRP4Q8TDF6 673 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 FUT8Q9BYC5 575 aa9□□□□□ -0.97
NIPBL-202ENST00000448238 CCNT2O60583 730 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 PRKCBP05771 671 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 COLEC12Q5KU26 742 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 DNAJB7Q7Z6W7 309 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 TRPM4Q8TD43 1214 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 CD300LFQ8TDQ1 290 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 IL1RAPQ9NPH3 570 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 FANCFQ9NPI8 374 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 MRPS33Q9Y291 106 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 PCDHGB7Q9Y5F8 929 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF780BQ9Y6R6 833 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 A0A087X1B8 175 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 ABHD14A-ACY1A0A1B0GW23 586 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 RIIAD1A6NNX1 92 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 NOTOA8MTQ0 251 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 HSPA12AO43301 675 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 ZC3H11AO75152 810 aaKnown RBP eCLIP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 MLYCDO95822 493 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 RCAN1P53805 252 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 MOGSQ13724 837 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 ACOX1Q15067 660 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 AKR1C8PQ5T2L2 129 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 METTL21CQ5VZV1 264 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 C1orf186Q6ZWK4 172 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 SPATA33Q96N06 139 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 CDRT15Q96T59 188 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 RABL2AQ9UBK7 228 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 RABL2BQ9UNT1 228 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 C14orf166Q9Y224 244 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 TRAPPC8Q9Y2L5 1435 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 CYP26A1O43174 497 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 UGT2B17O75795 530 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 PGAM2P15259 253 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 APLP1P51693 650 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 ELP6Q0PNE2 266 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 CCNYL2Q5T2Q4 361 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 PTF1AQ7RTS3 328 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 NSUN7Q8NE18 718 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 BHLHE22Q8NFJ8 381 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 TRPV4Q9HBA0 871 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 DNAAF2Q9NVR5 837 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 PCDHGB6Q9Y5F9 930 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 RPLP2P05387 115 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 LINGO3P0C6S8 592 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 CYP2C9P11712 490 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 COILP38432 576 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 RPL13AP40429 203 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 SCNN1DP51172 638 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 MAPK12P53778 367 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 DNAJB3Q8WWF6 145 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 ATXN2LQ8WWM7 1075 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF717Q9BY31 904 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 MID1IP1Q9NPA3 183 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 HCN3Q9P1Z3 774 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 PER2O15055 1255 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 ODC1P11926 461 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 GLRBP48167 497 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 CD151P48509 253 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 USP11P51784 963 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 RBM44Q6ZP01 1051 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 SLC34A3Q8N130 599 aa8.99□□□□□ -0.97
NIPBL-202ENST00000448238 DQX1Q8TE96 717 aaKnown RBP8.99□□□□□ -0.97
NIPBL-202ENST00000448238 SYN2Q92777 582 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms