RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CLCA1A8K7I4 914 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SUV39H1O43463 412 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 PRKCBP05771 671 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 GLI1P08151 1106 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CYP2A13Q16696 494 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 C11orf74Q86VG3 221 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 DNAJB14Q8TBM8 379 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 IGDCC4Q8TDY8 1250 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TCEAL3Q969E4 200 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 KIF12Q96FN5 646 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SLC6A16Q9GZN6 736 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 GTF2IRD1Q9UHL9 959 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 INPP5FQ9Y2H2 1132 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CPS1P31327 1500 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 GNG14A0A1W2PPG7 69 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 RBAK-RBAKDNI3L0D1 243 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TSC22D2O75157 780 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 HADHBP55084 474 aaKnown RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 ZSWIM7Q19AV6 140 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 C12orf50Q8NA57 414 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 SPPL2AQ8TCT8 520 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 NXNL1Q96CM4 212 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 NODALQ96S42 347 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 AIF1LQ9BQI0 150 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 MMP27Q9H306 513 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 RNPEPQ9H4A4 650 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 A0A0A0MRY4 1105 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PORP16435 677 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 TAS2R43P59537 309 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 RPS6P62753 249 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 HHIPL2Q6UWX4 724 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ZC3HC1Q86WB0 502 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 HTR3CQ8WXA8 447 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 NELL1Q92832 810 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SPATA13Q96N96 652 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 AIFM3Q96NN9 605 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 CXorf21Q9HAI6 301 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ABCB10Q9NRK6 738 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 INTS10Q9NVR2 710 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 CLIC5Q9NZA1 410 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PCDHGA12O60330 932 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 MEGF6O75095 1541 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 FADS2O95864 444 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 RPLP0P05388 317 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 MRPS22P82650 360 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 ZNF543Q08ER8 600 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 FNDC5Q8NAU1 212 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PLEKHO2Q8TD55 490 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 UNC93B1Q9H1C4 597 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 TRIT1Q9H3H1 467 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 EPB41L1Q9H4G0 881 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 OPTCQ9UBM4 332 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PLOD2O00469 737 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ENTPD5O75356 428 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 CYP7B1O75881 506 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 HLA-DRAP01903 254 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 DRICH1Q6PGQ1 229 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 METTL6Q8TCB7 284 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 FNIP2Q9P278 1114 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 TELO2Q9Y4R8 837 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 CLRN2A0PK11 232 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ILVBLA1L0T0 632 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 C5orf60A6NFR6 353 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PPEF1O14829 653 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 CRHR1P34998 444 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 GYG1P46976 350 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ACSM2AQ08AH3 577 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 CCDC58Q4VC31 144 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ZNF484Q5JVG2 852 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ACSM2BQ68CK6 577 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 GPAT2Q6NUI2 795 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SLCO2A1Q92959 643 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 C7orf50Q9BRJ6 194 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 LGR6Q9HBX8 967 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 GPRC5DQ9NZD1 345 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SPATA31A6Q5VVP1 1343 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 GCATO75600 419 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 RAD17O75943 681 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 CATP04040 527 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 OR56A5P0C7T3 313 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 TLX1P31314 330 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 E2F2Q14209 437 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 MAGEE2Q8TD90 523 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 DCAKDQ8WVC6 231 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 EHD4Q9H223 541 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ZNF609O15014 1411 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PTPRJQ12913 1337 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 LOC100506127A0A0U1RQW1 187 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ALOX15BO15296 676 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ITGA2BP08514 1039 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 TPSB2P20231 275 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 EIF2S3P41091 472 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 TPSAB1Q15661 275 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 TTC7BQ86TV6 843 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 KIF18BQ86Y91 864 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 DNAJC10Q8IXB1 793 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 CDYL2Q8N8U2 506 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 EXD2Q9NVH0 621 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SLC16A4O15374 487 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 DCXO43602 365 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms