RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 KANSL1LA0AUZ9 987 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 TTC24A2A3L6 582 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 TK2O00142 265 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 CXCL11O14625 94 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 TNPO2O14787 897 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 HTRA2O43464 458 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ANXA9O76027 345 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 NPPAP01160 153 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 LGALS2P05162 132 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PYGLP06737 847 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 GPIP06744 558 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 SNRPB2P08579 225 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 RBP1P09455 135 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 UMPSP11172 480 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 STMN1P16949 149 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF12P17014 697 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 JUNBP17275 347 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 NPR3P17342 541 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PAMP19021 973 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PCSK6P29122 969 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 EPHA3P29320 983 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 GNL1P36915 607 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 RANBP1P43487 201 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 CXCR3P49682 368 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 KCNC4Q03721 635 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 C6orf52Q5T4I8 152 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 IL23RQ5VWK5 629 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 REP15Q6BDI9 236 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PRR23BQ6ZRT6 265 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 LARP4Q71RC2 724 aaKnown RBP eCLIP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ARMCX2Q7L311 632 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 FASTKD5Q7L8L6 764 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF554Q86TJ5 538 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 GPR180Q86V85 440 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 CAMK1DQ8IU85 385 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 FIBCD1Q8N539 461 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PDPRQ8NCN5 879 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 OR2T34Q8NGX1 318 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 OR2T3Q8NH03 318 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 CLEC4CQ8WTT0 213 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ITPKCQ96DU7 683 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 MFSD3Q96ES6 412 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 TSPAN17Q96FV3 270 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 UBXN10Q96LJ8 280 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 TASP1Q9H6P5 420 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 COQ10BQ9H8M1 238 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 CDHR5Q9HBB8 845 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 POPDC3Q9HBV1 291 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ENTPD7Q9NQZ7 604 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 C20orf96Q9NUD7 363 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 OSER1Q9NX31 292 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 B3GNT3Q9Y2A9 372 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 MFHAS1Q9Y4C4 1052 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 NRCAMQ92823 1304 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 IQCA1LA6NCM1 817 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 FBP2O00757 339 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ZBTB24O43167 697 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 AKAP10O43572 662 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ZMPSTE24O75844 475 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 MAP3K6O95382 1288 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PGK1P00558 417 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 INHBBP09529 407 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ERCC2P18074 760 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 GABRB3P28472 473 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 HOXA11P31270 313 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 CD97P48960 835 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 GMPSP49915 693 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 CLCN5P51795 746 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ATXN1P54253 815 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 NAGLUP54802 743 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 TUBA3CQ13748 450 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 DSG2Q14126 1118 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 USP10Q14694 798 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ACAP2Q15057 778 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ARL13BQ3SXY8 428 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC36A3Q495N2 470 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 HMBOX1Q6NT76 420 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PIGZQ86VD9 579 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PYROXD2Q8N2H3 581 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PCYOX1LQ8NBM8 494 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 CALML6Q8TD86 181 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ZMAT2Q96NC0 199 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 C16orf70Q9BSU1 422 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 UPF3AQ9H1J1 476 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PIF1Q9H611 641 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 ATP13A1Q9HD20 1204 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 AGPAT4Q9NRZ5 378 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 RNF19AQ9NV58 838 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PIM2Q9P1W9 311 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 XPR1Q9UBH6 696 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PCDHGB4Q9UN71 923 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 RUVBL2Q9Y230 463 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 NDUFAF1Q9Y375 327 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 MTF2Q9Y483 593 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 PCDHGB5Q9Y5G0 923 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 TRPM7Q96QT4 1865 aa5.79□□□□□ -1.48
CCDC88A-203ENST00000412148 TYW5A2RUC4 315 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-203ENST00000412148 RRN3P2A6NIE6 340 aa5.78□□□□□ -1.48
CCDC88A-203ENST00000412148 H0YAE9 185 aa5.78□□□□□ -1.48
CCDC88A-203ENST00000412148 H3BSA7 217 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms