RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 TMEM215Q68D42 235 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 DENND5AQ6IQ26 1287 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 ADIPOR2Q86V24 386 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 CAMK1DQ8IU85 385 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 AHI1Q8N157 1196 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 MSLNLQ96KJ4 702 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 ATP6V1G3Q96LB4 118 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 SMIM14Q96QK8 99 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 PAFAH2Q99487 392 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 TRMT61BQ9BVS5 477 aaKnown RBP3.75□□□□□ -1.81
RTN4-208ENST00000404909 ACSS3Q9H6R3 686 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 PLAC1Q9HBJ0 212 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 HPS4Q9NQG7 708 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 MARK1Q9P0L2 795 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 SLC17A6Q9P2U8 582 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 LHX3Q9UBR4 397 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 CD207Q9UJ71 328 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 PCDHB9Q9Y5E1 797 aa3.75□□□□□ -1.81
RTN4-208ENST00000404909 CHD5Q8TDI0 1954 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 A0A1W2PPC1 479 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 CXorf49A8MYA2 514 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 AP3B1O00203 1094 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 CDH16O75309 829 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 SPAG6O75602 509 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 FAM155BO75949 473 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 PIGNO95427 931 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 INHBAP08476 426 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 BMP1P13497 986 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 KRT15P19012 456 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 CR2P20023 1033 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 NMBRP28336 390 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 SLC8A1P32418 973 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 NNMTP40261 264 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 PLK1P53350 603 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 TMPRSS15P98073 1019 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 SULT2A1Q06520 285 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 NR1H3Q13133 447 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 RUNX3Q13761 415 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 PDGFRLQ15198 375 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 CNGA3Q16281 694 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 KLHL38Q2WGJ6 581 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ANKRD20A4Q4UJ75 823 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 PCID2Q5JVF3 399 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 RNF43Q68DV7 783 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 Q6ZVU0 165 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 SRLQ86TD4 932 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 LRRC6Q86X45 466 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 CCNJLQ8IV13 435 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 SFTPA1Q8IWL2 248 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ZNF557Q8N988 423 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.74□□□□□ -1.813e-10■■■■■ 28.4
RTN4-208ENST00000404909 PPHLN1Q8NEY8 458 aaKnown RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 GRIN3AQ8TCU5 1115 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 LMLNQ96KR4 655 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 FCRL3Q96P31 734 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 NUDCD1Q96RS6 583 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 NAT9Q9BTE0 207 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 TDRD1Q9BXT4 1180 aaKnown RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 ROPN1BQ9BZX4 212 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 MTG2Q9H4K7 406 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ZDHHC6Q9H6R6 413 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 BRD9Q9H8M2 597 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ROPN1Q9HAT0 212 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 TRPV4Q9HBA0 871 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ZDHHC4Q9NPG8 344 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 C20orf96Q9NUD7 363 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 ZFATQ9P243 1243 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 SLC2A6Q9UGQ3 507 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 PLA2G4CQ9UP65 541 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 FNDC3AQ9Y2H6 1198 aaKnown RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 NUMBLQ9Y6R0 609 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 HELZP42694 1942 aaKnown RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 BPTFQ12830 3046 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 TMEM265A0A087WTH1 108 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 A0A0U1RQS6 177 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 MAGEB16A2A368 324 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 TTC34A8MYJ7 566 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 PRRT4C9JH25 899 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 CCL22O00626 93 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 HOXC11O43248 304 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 UGT1A9O60656 530 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ZNF821O75541 412 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 IGSF6O95976 241 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ATP5BP06576 529 aaKnown RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 ATXN1LP0C7T5 689 aaKnown RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 CES1P23141 567 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 RECQLP46063 649 aaPredicted RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 SOX9P48436 509 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ATP1A2P50993 1020 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 SNRPD1P62314 119 aaKnown RBP3.74□□□□□ -1.81
RTN4-208ENST00000404909 BCL2L1Q07817 233 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 SLC20A2Q08357 652 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 NSUN2Q08J23 767 aaKnown RBP eCLIP3.74□□□□□ -1.81
RTN4-208ENST00000404909 FCHO2Q0JRZ9 810 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 TRAF2Q12933 501 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 PTPRRQ15256 657 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 HSP90AA5PQ58FG0 334 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ALG1LQ6GMV1 187 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 GRAMD4Q6IC98 578 aa3.74□□□□□ -1.81
RTN4-208ENST00000404909 ESRP1Q6NXG1 681 aaKnown RBP3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms