RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TUBGCP5Q96RT8 1024 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 TBL1YQ9BQ87 522 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 APOL2Q9BQE5 337 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 CPEB1Q9BZB8 566 aaKnown RBP18.26■□□□□ 0.51
SDC1-203ENST00000403076 FOXQ1Q9C009 403 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 EIF2B3Q9NR50 452 aaKnown RBP18.26■□□□□ 0.51
SDC1-203ENST00000403076 IL36AQ9UHA7 158 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 SHOC2Q9UQ13 582 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 ATG2BQ96BY7 2078 aa18.26■□□□□ 0.51
SDC1-203ENST00000403076 BHMG1C9JSJ3 638 aaPredicted RBP18.25■□□□□ 0.51
SDC1-203ENST00000403076 USP12O75317 370 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 PIGNO95427 931 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 AGTP01019 485 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 CHRNB1P11230 501 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 MAGEA6P43360 314 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 CDK18Q07002 472 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 ENPP2Q13822 863 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 IHHQ14623 411 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 HSF5Q4G112 596 aaPredicted RBP18.25■□□□□ 0.51
SDC1-203ENST00000403076 ARSIQ5FYB1 569 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 EOGTQ5NDL2 527 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 CFAP58Q5T655 872 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 KCTD11Q693B1 232 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 DSG4Q86SJ6 1040 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 SYNPOQ8N3V7 929 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 SLC25A41Q8N5S1 370 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 PRCCQ92733 491 aaPredicted RBP18.25■□□□□ 0.51
SDC1-203ENST00000403076 ART4Q93070 314 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 NSMCE3Q96MG7 304 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 PRSS16Q9NQE7 514 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 NFU1Q9UMS0 254 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 CHKBQ9Y259 395 aa18.25■□□□□ 0.51
SDC1-203ENST00000403076 MTF2Q9Y483 593 aaPredicted RBP18.25■□□□□ 0.51
SDC1-203ENST00000403076 UNC80Q8N2C7 3258 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 TMEM63AO94886 807 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 UGT2B4P06133 528 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 HOXB2P14652 356 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 MCM3P25205 808 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 TRAF2Q12933 501 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 OLIG2Q13516 323 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 ELAVL3Q14576 367 aaKnown RBP18.24■□□□□ 0.51
SDC1-203ENST00000403076 ARMC12Q5T9G4 340 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 DNAAF3Q8N9W5 541 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 FBXO25Q8TCJ0 367 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 TADA1Q96BN2 335 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 GABRG3Q99928 467 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 PARD6BQ9BYG5 372 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 MFSD1Q9H3U5 465 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 SUV39H2Q9H5I1 410 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 MTRF1LQ9UGC7 380 aaKnown RBP18.24■□□□□ 0.51
SDC1-203ENST00000403076 WASF2Q9Y6W5 498 aa18.24■□□□□ 0.51
SDC1-203ENST00000403076 ALOX15BO15296 676 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 CTIFO43310 598 aaKnown RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 RNASEH1O60930 286 aaKnown RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 LEFTY1O75610 366 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 SUN1O94901 812 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 PRNPP04156 253 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 EPHB1P54762 984 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 GDPD4Q6W3E5 623 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 KLHDC8BQ8IXV7 354 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 MCUQ8NE86 351 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 RMDN1Q96DB5 314 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 LRIG1Q96JA1 1093 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 FEM1CQ96JP0 617 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 ZNF641Q96N77 438 aaPredicted RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 KLHL32Q96NJ5 620 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 TDRD1Q9BXT4 1180 aaKnown RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 ADGRE3Q9BY15 652 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 FAM129AQ9BZQ8 928 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 XAB2Q9HCS7 855 aaKnown RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 ARIH1Q9Y4X5 557 aaPredicted RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 PCDHB9Q9Y5E1 797 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 MUC22E2RYF6 1773 aaPredicted RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 KPNA3O00505 521 aaPredicted RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 ADAM23O75077 832 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 SOCS5O75159 536 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 NDST3O95803 873 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 IL1BP01584 269 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 TUBBP07437 444 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 CHRM1P11229 460 aaPredicted RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 ADRA1AP35348 466 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 GRIA1P42261 906 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 SIGLEC14Q08ET2 396 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 CAMK2GQ13555 558 aaPredicted RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 ZDHHC24Q6UX98 284 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 Q6ZS52 159 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 TMIEQ8NEW7 156 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 LPCAT1Q8NF37 534 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 OR52K1Q8NGK4 314 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 PIP4K2CQ8TBX8 421 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 FAM129BQ96TA1 746 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 OSBPL1AQ9BXW6 950 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 FRMD8Q9BZ67 464 aaPredicted RBP18.23■□□□□ 0.51
SDC1-203ENST00000403076 MMP17Q9ULZ9 603 aa18.23■□□□□ 0.51
SDC1-203ENST00000403076 LOC285095A0A1B0GVY8 99 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 DCXO43602 365 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 ATG13O75143 517 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 EPOP01588 193 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 CTSLP07711 333 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 HLA-DPA1P20036 260 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms