RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ELAVL2Q12926 359 aaKnown RBP18.69■□□□□ 0.58
USP48-204ENST00000400301 LSM12Q3MHD2 195 aaKnown RBP18.69■□□□□ 0.58
USP48-204ENST00000400301 SPRYD7Q5W111 196 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 FAM45BPQ6NSW5 357 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 DSELQ8IZU8 1212 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 FAM45AQ8TCE6 357 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 MYH9P35579 1960 aaKnown RBP18.69■□□□□ 0.58
USP48-204ENST00000400301 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.69■□□□□ 0.58
USP48-204ENST00000400301 PGM3O95394 542 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 ALBP02768 609 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 KCNE1P15382 129 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 TAS2R39P59534 338 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 ACTR3P61158 418 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 FKBP1BP68106 108 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 SQLEQ14534 574 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 CGB2Q6NT52 195 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 LDB1Q86U70 411 aaPredicted RBP18.69■□□□□ 0.58
USP48-204ENST00000400301 NPLOC4Q8TAT6 608 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 SKA1Q96BD8 255 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 TCAF1Q9Y4C2 921 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 CCL22O00626 93 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 CYBBP04839 570 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 ITGB6P18564 788 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 BIRC2Q13490 618 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 NOMO2Q5JPE7 1267 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 ELMOD1Q8N336 334 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 EXOC2Q96KP1 924 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 ASPSCR1Q9BZE9 553 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 ZCWPW1Q9H0M4 648 aa18.69■□□□□ 0.58
USP48-204ENST00000400301 COL5A3P25940 1745 aaPredicted RBP18.68■□□□□ 0.58
USP48-204ENST00000400301 E9PAM4 449 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 PIRO00625 290 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 TRIM38O00635 465 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 FASP25445 335 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 NNMTP40261 264 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 CHN2P52757 468 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 MATN3O15232 486 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 PSEN1P49768 467 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 ATP6AP1LQ52LC2 224 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 TNFAIP8L3Q5GJ75 292 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 ASRGL1Q7L266 308 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 CUZD1Q86UP6 607 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 SH3BP1Q9Y3L3 701 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 BHMG1C9JSJ3 638 aaPredicted RBP18.68■□□□□ 0.58
USP48-204ENST00000400301 GCAP28676 217 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 CHRNA4P43681 627 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 GSCP56915 257 aaPredicted RBP18.68■□□□□ 0.58
USP48-204ENST00000400301 CDK18Q07002 472 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 OLFML2BQ68BL8 750 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 GK5Q6ZS86 529 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 FAM228AQ86W67 206 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 TREML1Q86YW5 311 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 IFNLR1Q8IU57 520 aaPredicted RBP18.68■□□□□ 0.58
USP48-204ENST00000400301 FNDC5Q8NAU1 212 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 ATAD1Q8NBU5 361 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 STAG3L4Q8TBR4 150 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 KCTD13Q8WZ19 329 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 FAM162AQ96A26 154 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 TMEM169Q96HH4 297 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 ASB2Q96Q27 587 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 SEPHS2Q99611 448 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 VPS45Q9NRW7 570 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 C6orf203Q9P0P8 240 aaPredicted RBP18.68■□□□□ 0.58
USP48-204ENST00000400301 PSMD13Q9UNM6 376 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 CAPN8A6NHC0 703 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 CCL14Q16627 93 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 CCDC142Q17RM4 750 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 TIFABQ6ZNK6 161 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 AGO3Q9H9G7 860 aaKnown RBP18.68■□□□□ 0.58
USP48-204ENST00000400301 TRAF6Q9Y4K3 522 aa18.68■□□□□ 0.58
USP48-204ENST00000400301 PEX1O43933 1283 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 SYNCRIPO60506 623 aaKnown RBP18.67■□□□□ 0.58
USP48-204ENST00000400301 KATNA1O75449 491 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 F2P00734 622 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 LBPP18428 481 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 GALNT3Q14435 633 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 PAFAH1B3Q15102 231 aaKnown RBP18.67■□□□□ 0.58
USP48-204ENST00000400301 SLC9B1Q4ZJI4 515 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 RNF220Q5VTB9 566 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 MFN1Q8IWA4 741 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 MYO1HQ8N1T3 1032 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 SNX31Q8N9S9 440 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 METTL6Q8TCB7 284 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 TRAPPC9Q96Q05 1148 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 POMPQ9Y244 141 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 ZNF839A8K0R7 811 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 ZNF487B1APH4 448 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 ABLIM1O14639 778 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 FOLH1Q04609 750 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 ADRM1Q16186 407 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 TTLL9Q3SXZ7 439 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 KCTD14Q9BQ13 255 aaPredicted RBP18.67■□□□□ 0.58
USP48-204ENST00000400301 SLC39A8Q9C0K1 460 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 PGAP2Q9UHJ9 254 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 EIF3LQ9Y262 564 aaKnown RBP18.67■□□□□ 0.58
USP48-204ENST00000400301 EME2A4GXA9 379 aaPredicted RBP18.67■□□□□ 0.58
USP48-204ENST00000400301 GRIA3P42263 894 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 PRR11Q96HE9 360 aaPredicted RBP18.67■□□□□ 0.58
USP48-204ENST00000400301 ACOX2Q99424 681 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 ZBED2Q9BTP6 218 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms