RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 DDX4Q9NQI0 724 aaKnown RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 C3orf18Q9UK00 162 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 CDH9Q9ULB4 789 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 NENFQ9UMX5 172 aa9.39□□□□□ -0.91
COL28A1-201ENST00000399429 FARP1Q9Y4F1 1045 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-201ENST00000399429 BCL9LQ86UU0 1499 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CCDC162PA2VCL2 907 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 C7orf72A4D263 438 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 M0QX08 132 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CPNE3O75131 537 aaKnown RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 XYLBO75191 536 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 RGS20O76081 388 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 PGLSO95336 258 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ATG7O95352 703 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CST1P01037 141 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 FTH1P02794 183 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ZBTB48P10074 688 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 IRF9Q00978 393 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 GBE1Q04446 702 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 TAB1Q15750 504 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 TMEM236Q5W0B7 351 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 NAPEPLDQ6IQ20 393 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 FSTL4Q6MZW2 842 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ANKRD13BQ86YJ7 626 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 PLD5Q8N7P1 536 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ABHD11Q8NFV4 315 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 GRPEL2Q8TAA5 225 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 POPDC2Q9HBU9 364 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CD320Q9NPF0 282 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF302Q9NR11 478 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 IMPAD1Q9NX62 359 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 STAP1Q9ULZ2 295 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 SLC27A5Q9Y2P5 690 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 MYH11P35749 1972 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CROCCQ5TZA2 2017 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 STX7O15400 261 aaKnown RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 JCHAINP01591 159 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 LTFP02788 710 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CYP3A4P08684 503 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 FAM163BP0C2L3 166 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CLK2P49760 499 aaKnown RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 VBP1P61758 197 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CLCQ05315 142 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 BNIP2Q12982 314 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 MON2Q7Z3U7 1717 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 PIWIL4Q7Z3Z4 852 aaKnown RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 MMAAQ8IVH4 418 aaKnown RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 LILRA2Q8N149 483 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 STX19Q8N4C7 294 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 OR9I1Q8NGQ6 314 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 TSPAN17Q96FV3 270 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 JPH1Q9HDC5 661 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 AASDHPPTQ9NRN7 309 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 RASSF1Q9NS23 344 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 SLC38A7Q9NVC3 462 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 EXD2Q9NVH0 621 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 AKT3Q9Y243 479 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CPQQ9Y646 472 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ERI2A8K979 691 aaKnown RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 AREL1O15033 823 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 NOBOXO60393 691 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 NOS1APO75052 506 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 METTL18O95568 372 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 SNAP29O95721 258 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 PRKCBP05771 671 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 OGDHQ02218 1023 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CTBP1Q13363 440 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CCDC142Q17RM4 750 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 UGT3A1Q6NUS8 523 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF544Q6NX49 715 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 C16orf62Q7Z3J2 963 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 GALNT5Q7Z7M9 940 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 FAM126BQ8IXS8 530 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ANKRD52Q8NB46 1076 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 TBC1D15Q8TC07 691 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CHPT1Q8WUD6 406 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 CDHR1Q96JP9 859 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF560Q96MR9 790 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 C8orf37Q96NL8 207 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 SYT11Q9BT88 431 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 SNRNP25Q9BV90 132 aaKnown RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 NT5C1AQ9BXI3 368 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 ATXN3LQ9H3M9 355 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 COQ3Q9NZJ6 369 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 SLC30A1Q9Y6M5 507 aa9.38□□□□□ -0.91
COL28A1-201ENST00000399429 AFDNP55196 1824 aaKnown RBP9.38□□□□□ -0.91
COL28A1-201ENST00000399429 A0A0A0MRY4 1105 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CCDC182A6NF36 153 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 G3V2T6 193 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 BTN3A3O00478 584 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 TEX28O15482 410 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 BBOX1O75936 387 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SPIRE1Q08AE8 756 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SGO1Q5FBB7 561 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 XKR3Q5GH77 459 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 FAM160B1Q5W0V3 765 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 FAM91A1Q658Y4 838 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 RAP1GAP2Q684P5 730 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF470Q6ECI4 717 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms