RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TIMP2P16035 220 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 RBL1P28749 1068 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 CCNHP51946 323 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-202ENST00000394943 GNG11P61952 73 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 PLA2G2CQ5R387 149 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 ITPRIPL1Q6GPH6 555 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 KIAA1161Q6NSJ0 714 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 GDPD4Q6W3E5 623 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 DPY19L3Q6ZPD9 716 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 CYS1Q717R9 158 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 IQCHQ86VS3 1027 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 GRK7Q8WTQ7 553 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 CYB5D2Q8WUJ1 264 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 PTCD2Q8WV60 388 aaKnown RBP7.09□□□□□ -1.27
LIMA1-202ENST00000394943 PAK5Q9P286 719 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 SARDHQ9UL12 918 aa7.09□□□□□ -1.27
LIMA1-202ENST00000394943 MROH6A6NGR9 719 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 CAPN8A6NHC0 703 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 RIOK3O14730 519 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 DAPK3O43293 454 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 TSPAN6O43657 245 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ALDH1A2O94788 518 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 EPN2O95208 641 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 RBP3P10745 1247 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF30P17039 623 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 CASQ1P31415 396 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 GDF10P55107 478 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 TMC3Q7Z5M5 1100 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 TECPR1Q7Z6L1 1165 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 GALNT7Q86SF2 657 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 NAT8LQ8N9F0 302 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 SCRN2Q96FV2 425 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 OXNAD1Q96HP4 312 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 CELF6Q96J87 481 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 C1QTNF2Q9BXJ5 285 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 MKRN2Q9H000 416 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 CDH19Q9H159 772 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 TRABDQ9H4I3 376 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 SUV39H2Q9H5I1 410 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 SP110Q9HB58 689 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 SMOXQ9NWM0 555 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 EVLQ9UI08 416 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 C1QTNF3-AMACRE9PGA6 284 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ZBTB24O43167 697 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ST8SIA6P61647 398 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 TRAF2Q12933 501 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF211Q13398 564 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 DUPD1Q68J44 220 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 PDPK2PQ6A1A2 396 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 IL31Q6EBC2 164 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ERN2Q76MJ5 926 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 BBS5Q8N3I7 341 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 MDGA1Q8NFP4 955 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 PPP1R16AQ96I34 528 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 CINPQ9BW66 212 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 RBM12Q9NTZ6 932 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 TRMT1Q9NXH9 659 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 SLC8A2Q9UPR5 921 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 AAR2Q9Y312 384 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 PCDHGA5Q9Y5G8 931 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ANXA9O76027 345 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 HLA-DPA1P20036 260 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 SP100P23497 879 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 NNMTP40261 264 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 GEMP55040 296 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 CKAP4Q07065 602 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 FNDC3BQ53EP0 1204 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 PMS2CLQ68D20 193 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 SDE2Q6IQ49 451 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 STK40Q8N2I9 435 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 TTC30BQ8N4P2 665 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 TSEN2Q8NCE0 465 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 CHST14Q8NCH0 376 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 SORCS1Q8WY21 1168 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 PBXIP1Q96AQ6 731 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 IFT43Q96FT9 208 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ATP13A3Q9H7F0 1226 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 NOD2Q9HC29 1040 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ZDHHC4Q9NPG8 344 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 DMTF1Q9Y222 760 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 FCF1Q9Y324 198 aaKnown RBP7.08□□□□□ -1.28
LIMA1-202ENST00000394943 ACTL7AQ9Y615 435 aa7.08□□□□□ -1.28
LIMA1-202ENST00000394943 A0A0J9YYE9 177 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 CBX4O00257 560 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 TRBC1P01850 177 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 TIE1P35590 1138 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 RNASEH2BQ5TBB1 312 aaKnown RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 HIBCHQ6NVY1 386 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 PARS2Q7L3T8 475 aaKnown RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 ATP11CQ8NB49 1132 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 TMEM145Q8NBT3 493 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 SPATA4Q8NEY3 305 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 FOXP3Q9BZS1 431 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 HS3ST3A1Q9Y663 406 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 TRBV5-4A0A0C4DH59 114 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 UPK3BL1B0FP48 263 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 UPK3BL2E5RIL1 263 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 DFFAO00273 331 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms