RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 SLC22A12Q96S37 553 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 YME1L1Q96TA2 773 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 POLR1EQ9GZS1 481 aaKnown RBP11.24□□□□□ -0.61
TCOF1-203ENST00000394269 DONSONQ9NYP3 566 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 XPR1Q9UBH6 696 aa11.24□□□□□ -0.61
TCOF1-203ENST00000394269 UBA6A0AVT1 1052 aaPredicted RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 AP3B1O00203 1094 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 MGRN1O60291 552 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 ZMPSTE24O75844 475 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 PEX11BO96011 259 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 TSPAN8P19075 237 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 PMLP29590 882 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 CD151P48509 253 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 CCDC15Q0P6D6 951 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 NAB1Q13506 487 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 ASRGL1Q7L266 308 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 MFSD6LQ8IWD5 586 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 OR13C4Q8NGS5 318 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 FBXO27Q8NI29 283 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF461Q8TAF7 563 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 KCNK4Q9NYG8 393 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 HEATR9A2RTY3 570 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 H0Y626 953 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 TRIM13O60858 407 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 ATP5HO75947 161 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 TGDSO95455 350 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 RHOCP08134 193 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 ADRA1AP35348 466 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 OXCT1P55809 520 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 SMAD3P84022 425 aaKnown RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 GNA12Q03113 381 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 VEPH1Q14D04 833 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 FAM219BQ5XKK7 198 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 RINLQ6ZS11 566 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 ARL14EPQ8N8R7 260 aaPredicted RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 DNAJC1Q96KC8 554 aaKnown RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 CINPQ9BW66 212 aaPredicted RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 WDR55Q9H6Y2 383 aaPredicted RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 BPIFA1Q9NP55 256 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 A8MX80 341 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 KLF11O14901 512 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 SNAP91O60641 907 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 CCDC22O60826 627 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 MPOP05164 745 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 PTPN4P29074 926 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 GRIA4P48058 902 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 ARCN1P48444 511 aaKnown RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 CDK18Q07002 472 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 SLC12A1Q13621 1099 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 UGP2Q16851 508 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 CCDC153Q494R4 210 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 RNF219Q5W0B1 726 aaPredicted RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 TPGS1Q6ZTW0 290 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 DNAJB7Q7Z6W7 309 aaPredicted RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF683Q8IZ20 524 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 PAWRQ96IZ0 340 aaKnown RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 CLPTM1LQ96KA5 538 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 NUDCD1Q96RS6 583 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 GATA5Q9BWX5 397 aaPredicted RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 GPAMQ9HCL2 828 aa11.23□□□□□ -0.61
TCOF1-203ENST00000394269 MARCH4Q9P2E8 410 aaPredicted RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.23□□□□□ -0.61
TCOF1-203ENST00000394269 THSD7BQ9C0I4 1608 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 MT-CO1P00395 513 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 SERPINF2P08697 491 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 SLC35E2BP0CK96 405 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 CCDC166P0CW27 439 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 HNRNPLP14866 589 aaKnown RBP eCLIP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 MPSTP25325 297 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 RGRP47804 291 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 CSE1LP55060 971 aaKnown RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 RAB10P61026 200 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF33AQ06730 810 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 FBXO48Q5FWF7 155 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 ARTNQ5T4W7 220 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 KDELC1Q6UW63 502 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 TTC8Q8TAM2 541 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF558Q96NG5 402 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 CHUKO15111 745 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 SNNO75324 88 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF189O75820 626 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 URODP06132 367 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 SLC8A1P32418 973 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 HTR7P34969 479 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 PDCD2Q16342 344 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 CTC1Q2NKJ3 1217 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 TSTD2Q5T7W7 516 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 PIM3Q86V86 326 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 LRRC49Q8IUZ0 686 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 EFCAB3Q8N7B9 438 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 MAB21L3Q8N8X9 362 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 FAM13CQ8NE31 585 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 ZNF398Q8TD17 642 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 SKA1Q96BD8 255 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 SPATA17Q96L03 361 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 GPR22Q99680 433 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 MIPEPQ99797 713 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 ZBED2Q9BTP6 218 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 NUF2Q9BZD4 464 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms