RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 STAG3L4Q8TBR4 150 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 SLC35C1Q96A29 364 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 BHLHE41Q9C0J9 482 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-202ENST00000394243 PRAMEF33A0A0G2JMD5 474 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 PRAMEF10O60809 474 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 TYMPP19971 482 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 NTRK3Q16288 839 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 STRIP1Q5VSL9 837 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 PGBD3Q8N328 593 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 CAB39LQ9H9S4 337 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 CYP3A43Q9HB55 503 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 ROBO2Q9HCK4 1378 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 SAMD9Q5K651 1589 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 LRRC10BA6NIK2 292 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 BCKDKO14874 412 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 MAGEC1O60732 1142 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 NFKB1P19838 968 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 RENBPP51606 427 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 IL2P60568 153 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 DEFA5Q01523 94 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 KLF10Q13118 480 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 EFR3AQ14156 821 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 NEPROQ6NW34 567 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 PHACTR4Q8IZ21 702 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 CATSPERZQ9NTU4 200 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 AKAP7Q9P0M2 348 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-202ENST00000394243 FFAR3O14843 346 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 GPR42O15529 346 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 DYRK3O43781 588 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 CAPN15O75808 1086 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 ZNF432O94892 652 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 ARF4P18085 180 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-202ENST00000394243 MAGEA2P43356 314 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 ADIGQ0VDE8 80 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 PSTKQ8IV42 348 aaKnown RBP11.93□□□□□ -0.5
SYNPO-202ENST00000394243 OR2T34Q8NGX1 318 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 OR2T3Q8NH03 318 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 MCOLN3Q8TDD5 553 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 HAVCR1Q96D42 359 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 KCNS3Q9BQ31 491 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 PREBQ9HCU5 417 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 VPS28Q9UK41 221 aa11.93□□□□□ -0.5
SYNPO-202ENST00000394243 GSAPA4D1B5 854 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 TBX1O43435 398 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 KDM4BO94953 1096 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 FAUP35544 74 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 PRKAG1P54619 331 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 P2RY8Q86VZ1 359 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 HM13Q8TCT9 377 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 ACSS3Q9H6R3 686 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 OR14I1A6ND48 311 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 PRKD3O94806 890 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 EPORP19235 508 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 USF2Q15853 346 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 HYIQ5T013 277 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 RFWD3Q6PCD5 774 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 GLB1LQ6UWU2 654 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 BTBD9Q96Q07 612 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 RACGAP1Q9H0H5 632 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 TRIT1Q9H3H1 467 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 WASF2Q9Y6W5 498 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 ITGAVP06756 1048 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 BAG6P46379 1132 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 NDST1P52848 882 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 OR2B6P58173 313 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 FSCN1Q16658 493 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 DALRD3Q5D0E6 543 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 PIK3R6Q5UE93 754 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 CDC42EP5Q6NZY7 148 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 DQX1Q8TE96 717 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 KBTBD7Q8WVZ9 684 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 REPS1Q96D71 796 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 MRPL57Q9BQC6 102 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 CHCHD6Q9BRQ6 235 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 EMILIN2Q9BXX0 1053 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 TNPO3Q9Y5L0 923 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 POLR2EP19388 210 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 TFEBP19484 476 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 RPL38P63173 70 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 SIM2Q14190 667 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 TRMT11Q7Z4G4 463 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 IQCF2Q8IXL9 164 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 ANKRD13AQ8IZ07 590 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 ADAM32Q8TC27 787 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 RNF38Q9H0F5 515 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 ARL15Q9NXU5 204 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 SMPD3Q9NY59 655 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 ARHGEF5Q12774 1597 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 RPTORQ8N122 1335 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 SLC12A8A0AV02 714 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 GNB5O14775 395 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 FGFR1P11362 822 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 TSHRP16473 764 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 YBX3P16989 372 aaKnown RBP eCLIP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 HNF4AP41235 474 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 RAB2AP61019 212 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 PRKG2Q13237 762 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 TAF13Q15543 124 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 MOXD1Q6UVY6 613 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 DEF8Q6ZN54 512 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms