RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TMEM79Q9BSE2 394 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 TDRD1Q9BXT4 1180 aaKnown RBP11.26□□□□□ -0.61
CUX1-204ENST00000393824 FTHL17Q9BXU8 183 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 RAB6BQ9NRW1 208 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 PCDHB12Q9Y5F1 795 aa11.26□□□□□ -0.61
CUX1-204ENST00000393824 COL4A6Q14031 1691 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 KPNA7A9QM74 516 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 PRKCGP05129 697 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 RALBP11234 206 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 PTPN1P18031 435 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 NFKBIAP25963 317 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 PIK3R1P27986 724 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 GABRB3P28472 473 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 LRPAP1P30533 357 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 ADSLP30566 484 aaPredicted RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 TTKP33981 857 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 MAGEA3P43357 314 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 BRCC3P46736 316 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 DEPDC1Q5TB30 811 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 TRMT10BQ6PF06 316 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 OTOP2Q7RTS6 562 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 LYSMD3Q7Z3D4 306 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 SETD3Q86TU7 594 aaPredicted RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 CASD1Q96PB1 797 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 CGREF1Q99674 301 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 TRPC7Q9HCX4 862 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 ASNSD1Q9NWL6 643 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 TMEM161AQ9NX61 479 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 MOCS1Q9NZB8 636 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 COPG2Q9UBF2 871 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 GOLGA8TH3BQL2 631 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 XPOTO43592 962 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 KLHL41O60662 606 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 CILPO75339 1184 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 B3GAT3O94766 335 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 ATE1O95260 518 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 EOMESO95936 686 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 ALDOAP04075 364 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 CYP3A5P20815 502 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 NDST1P52848 882 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 ARPC4P59998 168 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 RPS3AP61247 264 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 PSMC1P62191 440 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 PDE1CQ14123 709 aaPredicted RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 RFTN1Q14699 578 aaPredicted RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 INAQ16352 499 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 PTPN20Q4JDL3 420 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 TIGD5Q53EQ6 642 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 CYP4A22Q5TCH4 519 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 GET4Q7L5D6 327 aaPredicted RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 OSTM1Q86WC4 334 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 TERB1Q8NA31 727 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 JOSD2Q8TAC2 188 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 CASP10Q92851 521 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 BADQ92934 168 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 SIGLEC10Q96LC7 697 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 EBNA1BP2Q99848 306 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 DCUN1D5Q9BTE7 237 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 CDH19Q9H159 772 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 CCDC68Q9H2F9 335 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 RPF2Q9H7B2 306 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 CXXC1Q9P0U4 656 aaPredicted RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 IPO11Q9UI26 975 aaKnown RBP11.25□□□□□ -0.61
CUX1-204ENST00000393824 B3GNT3Q9Y2A9 372 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 PRUNE2Q8WUY3 3088 aa11.25□□□□□ -0.61
CUX1-204ENST00000393824 MICAL3Q7RTP6 2002 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 BCLAF3A2AJT9 711 aaKnown RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 NT5C1B-RDH14C9J2C7 533 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 TGM2P21980 687 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 S100A1P23297 94 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 DCKP27707 260 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 MIPP30301 263 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 HOXD11P31277 338 aaPredicted RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 ATICP31939 592 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 DSC1Q08554 894 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 SLC10A2Q12908 348 aaPredicted RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 SLC9B1Q4ZJI4 515 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 NOMO2Q5JPE7 1267 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 KIAA0319Q5VV43 1072 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 OGFOD2Q6N063 350 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 NEPROQ6NW34 567 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 DENND1BQ6P3S1 775 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 GLB1LQ6UWU2 654 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 SNX32Q86XE0 403 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 C7orf61Q8IZ16 206 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 LRRC52Q8N7C0 313 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 BHMTQ93088 406 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 PGBD4Q96DM1 585 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 SLC4A5Q9BY07 1137 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 MAN1C1Q9NR34 630 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 TRNAU1APQ9NX07 287 aaKnown RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 SCHIP1Q9P0W5 487 aaPredicted RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 USP18Q9UMW8 372 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 CDC14AQ9UNH5 594 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 PRG3Q9Y2Y8 225 aaPredicted RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 AP4S1Q9Y587 144 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 INPPL1O15357 1258 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 FOXD2O60548 495 aaPredicted RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 STAU1O95793 577 aaKnown RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 CD1EP15812 388 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms