RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PABPC1LQ4VXU2 614 aaKnown RBP11.52□□□□□ -0.56
PTPRF-203ENST00000372407 BROXQ5VW32 411 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 ABRAXAS1Q6UWZ7 409 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 CLYBLQ8N0X4 340 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 OR7A2PQ8NGA2 310 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 MARK4Q96L34 752 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 QRFPRQ96P65 431 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 TRMOQ9BU70 441 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 POLR1BQ9H9Y6 1135 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 SNX6Q9UNH7 406 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 PDE4DIPQ5VU43 2346 aa11.52□□□□□ -0.56
PTPRF-203ENST00000372407 ATP6AP2A0A1C7CYW4 349 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ATP6AP2O75787 350 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ATN1P54259 1190 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ECM1Q16610 540 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF618Q5T7W0 954 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 TSHZ1Q6ZSZ6 1077 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 MOB2Q70IA6 237 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.52□□□□□ -0.571e-11■■□□□ 13.6
PTPRF-203ENST00000372407 COPS5Q92905 334 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 PCDHB18PQ96TA0 734 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 PCDHAC2Q9Y5I4 1007 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 COMMD3-BMI1R4GMX3 469 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 SPATA31C2B4DYI2 1134 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 SH3BGRLO75368 114 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 BPGMP07738 259 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 MAPK8P45983 427 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 CLK2P49760 499 aaKnown RBP11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ROR2Q01974 943 aaKnown RBP11.52□□□□□ -0.57
PTPRF-203ENST00000372407 UBAP2LQ14157 1087 aaKnown RBP11.52□□□□□ -0.57
PTPRF-203ENST00000372407 RAP1GAP2Q684P5 730 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ADAMTSL2Q86TH1 951 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF557Q8N988 423 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-203ENST00000372407 SLC4A5Q9BY07 1137 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ZYG11BQ9C0D3 744 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 NOL6Q9H6R4 1146 aaKnown RBP11.52□□□□□ -0.57
PTPRF-203ENST00000372407 PCDH18Q9HCL0 1135 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ERVK-5Q9HDB9 667 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 CNGB3Q9NQW8 809 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 SPATA2Q9UM82 520 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 BTBD3Q9Y2F9 522 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 SESN1Q9Y6P5 492 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 SF3B1O75533 1304 aaKnown RBP eCLIP11.52□□□□□ -0.57
PTPRF-203ENST00000372407 PRR5-ARHGAP8B1AHC4 643 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 PSEN1P49768 467 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ATP6V0D1P61421 351 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 USP46P62068 366 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ARHGAP8P85298 464 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 STX4Q12846 297 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 CTBP1Q13363 440 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 USP45Q70EL2 814 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 CLNKQ7Z7G1 428 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 JOSD2Q8TAC2 188 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 ATL1Q8WXF7 558 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 LHX5Q9H2C1 402 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 RAD18Q9NS91 495 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 RPS6KA6Q9UK32 745 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 PTCH2Q9Y6C5 1203 aa11.52□□□□□ -0.57
PTPRF-203ENST00000372407 H0YC42 278 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 TSC22D2O75157 780 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 C2P06681 752 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 POLD2P49005 469 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 RIPK1Q13546 671 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 BTG3Q14201 252 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 NOMO1Q15155 1222 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 QPCTQ16769 361 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 ZIK1Q3SY52 487 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 DEFB128Q7Z7B8 93 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 CDYL2Q8N8U2 506 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 BPIFB6Q8NFQ5 453 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 SOCS4Q8WXH5 440 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 NKD2Q969F2 451 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 P2RY11Q96G91 374 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 NDNQ99608 321 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 RHOJQ9H4E5 214 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 SLC17A7Q9P2U7 560 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 DHRS12A0PJE2 317 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 AZIN1O14977 448 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 GUCY1B2O75343 617 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 AVILO75366 819 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 TSPAN19P0C672 248 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 PAX3P23760 479 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 ITGADQ13349 1161 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 TAB1Q15750 504 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF57Q68EA5 555 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 ARHGAP36Q6ZRI8 547 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 SLC44A1Q8WWI5 657 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 POP5Q969H6 163 aaKnown RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 TRIM63Q969Q1 353 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 TINF2Q9BSI4 451 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 MECRQ9BV79 373 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 OSBPL11Q9BXB4 747 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 DIABLOQ9NR28 239 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 VAV3Q9UKW4 847 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 CORO1CQ9ULV4 474 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 GSTK1Q9Y2Q3 226 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 KCPQ6ZWJ8 1503 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 LTBP3Q9NS15 1303 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 LOC100506127A0A0U1RQW1 187 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 IRF6O14896 467 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms