RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RABL6Q3YEC7 729 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 TUBB8Q3ZCM7 444 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CFAP221Q4G0U5 840 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ALFQ53S48 1182 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 C15orf52Q6ZUT6 534 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 CENPUQ71F23 418 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PRUNE1Q86TP1 453 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ARID3BQ8IVW6 561 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 FAM20CQ8IXL6 584 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ZNF100Q8IYN0 542 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 NAT16Q8N8M0 369 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 DTWD2Q8NBA8 298 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PROX1Q92786 737 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 INPP5DQ92835 1189 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PPWD1Q96BP3 646 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 PTERQ96BW5 349 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TARS2Q9BW92 718 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 EIF3KQ9UBQ5 218 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 GTF2A1LQ9UNN4 478 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ARL2BPQ9Y2Y0 163 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 GJE1A6NN92 205 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 AP3D1O14617 1153 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TM9SF1O15321 606 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 DCTN3O75935 186 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SLC25A14O95258 325 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 GJB5O95377 273 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 EDN1P05305 212 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 FGF4P08620 206 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 DNASE1P24855 282 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 OTX2P32243 289 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TKTL1P51854 596 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ACTG1P63261 375 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TEKQ02763 1124 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 IL18R1Q13478 541 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 RUNX3Q13761 415 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ACAP1Q15027 740 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SF1Q15637 639 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 KHDC1LQ5JSQ8 128 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CYB5R4Q7L1T6 521 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 GRASPQ7Z6J2 395 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 EXOC3L1Q86VI1 746 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 C17orf64Q86WR6 236 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TNIP2Q8NFZ5 429 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.13□□□□□ -1.75
USH2A-202ENST00000366942 PTPRN2Q92932 1015 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 RAD51AP1Q96B01 352 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 STRBPQ96SI9 672 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 RC3H2Q9HBD1 1191 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 HPS4Q9NQG7 708 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 GCNT4Q9P109 453 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 WNT16Q9UBV4 365 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 FBXO9Q9UK97 447 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 ZNF214Q9UL59 606 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 SIK3Q9Y2K2 1263 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 DERAQ9Y315 318 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ZNF780BQ9Y6R6 833 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 hCG_1642624A0A1W2PR95 340 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CCT8L1PA6NM43 557 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SLC38A8A6NNN8 435 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TERTO14746 1132 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 SURF4O15260 269 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 MAGEB3O15480 346 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 RGS5O15539 181 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SEC31AO94979 1220 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 MATN4O95460 622 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 BCL10O95999 233 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 MAPTP10636 758 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 SRFP11831 508 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TERF1P54274 439 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 LAMTOR4Q0VGL1 99 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PDIA5Q14554 519 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 MESDQ14696 234 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 RAB39AQ14964 217 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CHSY3Q70JA7 882 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 S100A7AQ86SG5 101 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SYT12Q8IV01 421 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 IQCKQ8N0W5 287 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 FAM43AQ8N2R8 423 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CCDC197Q8NCU1 140 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 LPCAT1Q8NF37 534 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ANKK1Q8NFD2 765 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 OR5M3Q8NGP4 307 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ACER1Q8TDN7 264 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SH3RF2Q8TEC5 729 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TMEM40Q8WWA1 233 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ASB11Q8WXH4 323 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SNX21Q969T3 373 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TM6SF1Q9BZW5 370 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 POLR1EQ9GZS1 481 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 PUS7LQ9H0K6 701 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 VPS11Q9H270 941 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ELOVL6Q9H5J4 265 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 RMND5AQ9H871 391 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ALG13Q9NP73 1137 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 ZC4H2Q9NQZ6 224 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SNTG2Q9NY99 539 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SH3BGRL2Q9UJC5 107 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 RCOR1Q9UKL0 485 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PCDHGA2Q9Y5H1 932 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SAMD9LQ8IVG5 1584 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms