RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 OXCT1P55809 520 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 B4GALNT1Q00973 533 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 AUHQ13825 339 aaKnown RBP8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 DEFB109BQ30KR1 87 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 ALFQ53S48 1182 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 CERCAMQ5T4B2 595 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 FHL5Q5TD97 284 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 C1QL3Q5VWW1 255 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 KRT39Q6A163 491 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 C22orf39Q6P5X5 142 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 MACC1Q6ZN28 852 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 INTS8Q75QN2 995 aaKnown RBP8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 VPS36Q86VN1 386 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 ATCAYQ86WG3 371 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 UNC5BQ8IZJ1 945 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 TP53I13Q8NBR0 393 aaPredicted RBP8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 FBXL13Q8NEE6 735 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 KAT5Q92993 513 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 NUDT22Q9BRQ3 303 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 SPRY4Q9C004 299 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 DYRK4Q9NR20 520 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 APPL1Q9UKG1 709 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 VANGL2Q9ULK5 521 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 TRAF3IP3Q9Y228 551 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 TBC1D30Q9Y2I9 924 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 FRMD4BQ9Y2L6 1034 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 SNX10Q9Y5X0 201 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 B3GALT1Q9Y5Z6 326 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 TRPM6Q9BX84 2022 aa8.62□□□□□ -1.03
HMGB1P39-201ENST00000366304 MED13Q9UHV7 2174 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 LOC101059948A0A1B0GTJ6 334 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 ZNF891A8MT65 544 aaPredicted RBP8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 M0QYV0 167 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 ZMPSTE24O75844 475 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 CD160O95971 181 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 APOEP02649 317 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 PRF1P14222 555 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 NR2F2P24468 414 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 ELAVL4P26378 380 aaKnown RBP8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 GRNP28799 593 aaKnown RBP8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 L1CAMP32004 1257 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 HK3P52790 923 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 THOP1P52888 689 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 NUCB2P80303 420 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 PPARDQ03181 441 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 CDC20Q12834 499 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 LRMPQ12912 555 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 KLRB1Q12918 225 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 SGCGQ13326 291 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 OGFOD3Q6PK18 319 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 TIPARPQ7Z3E1 657 aaKnown RBP8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 HID1Q8IV36 788 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 ZNF683Q8IZ20 524 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 CACNA2D3Q8IZS8 1091 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 TTC39CQ8N584 583 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 DENND6BQ8NEG7 585 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 OR6K2Q8NGY2 324 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 ASB12Q8WXK4 309 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 TMEM159Q96B96 161 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 TCTN2Q96GX1 697 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 FAXDC2Q96IV6 333 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 SLC45A3Q96JT2 553 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 RPRD1AQ96P16 312 aaPredicted RBP8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 CMKLR1Q99788 373 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 EDEM3Q9BZQ6 932 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 B3GNT4Q9C0J1 378 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 CDH19Q9H159 772 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 HS3ST4Q9Y661 456 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 CSMD2Q7Z408 3487 aa8.61□□□□□ -1.03
HMGB1P39-201ENST00000366304 HIVEP3Q5T1R4 2406 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 SYNJ2BP-COX16A0A087WUM0 186 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 IGHV5-10-1A0A0J9YXX1 117 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 C16orf96A6NNT2 1141 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 RAD1O60671 282 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 MMP20O60882 483 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 FBXO21O94952 628 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 SYT1P21579 422 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 GTF2H1P32780 548 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 RECQLP46063 649 aaPredicted RBP8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 MXI1P50539 228 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 ATP1A2P50993 1020 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 OR1D5P58170 312 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 PTK2BQ14289 1009 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 HLTFQ14527 1009 aaKnown RBP eCLIP8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 RABEP1Q15276 862 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 IRF4Q15306 451 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 CNGA2Q16280 664 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 C5orf22Q49AR2 442 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 ZCWPW2Q504Y3 356 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 RABGAP1LQ5R372 815 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 TTC39BQ5VTQ0 682 aaPredicted RBP8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 OTUD1Q5VV17 481 aaPredicted RBP8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 DENND1BQ6P3S1 775 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 FOXR2Q6PJQ5 311 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 LVRNQ6Q4G3 990 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 MAMDC2Q7Z304 686 aaPredicted RBP8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 RD3Q7Z3Z2 195 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 FSTL5Q8N475 847 aaPredicted RBP8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 IL22RA1Q8N6P7 574 aa8.6□□□□□ -1.03
HMGB1P39-201ENST00000366304 GALNT11Q8NCW6 608 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms