RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SRGAP2O75044 1071 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 TM7SF2O76062 418 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 GSRP00390 522 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 RPLP0P05388 317 aaKnown RBP14.04□□□□□ -0.16
VPS29-201ENST00000360579 FAM87AP0C7U9 286 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 CTSEP14091 401 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 IGFALSP35858 605 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 PEX5P50542 639 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 HK3P52790 923 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 SNRPD1P62314 119 aaKnown RBP14.04□□□□□ -0.16
VPS29-201ENST00000360579 ARHGAP44Q17R89 818 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 SLC25A52Q3SY17 297 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 PTPN20Q4JDL3 420 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 TRIM65Q6PJ69 517 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 GKN2Q86XP6 184 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 KYQ8NBH2 561 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 PCDH19Q8TAB3 1148 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 CXorf40AQ8TE69 158 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 NELFBQ8WX92 580 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 TIGD1Q96MW7 591 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 CPEB1Q9BZB8 566 aaKnown RBP14.04□□□□□ -0.16
VPS29-201ENST00000360579 EDEM3Q9BZQ6 932 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 FOXP3Q9BZS1 431 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 LRRN3Q9H3W5 708 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 RETREG1Q9H6L5 497 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 PPARGC1AQ9UBK2 798 aaKnown RBP14.04□□□□□ -0.16
VPS29-201ENST00000360579 ZNF212Q9UDV6 495 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 PISDQ9UG56 409 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 GGT7Q9UJ14 662 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 PNMA8BQ9ULN7 279 aaPredicted RBP14.04□□□□□ -0.16
VPS29-201ENST00000360579 ITM2BQ9Y287 266 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 LOXL2Q9Y4K0 774 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 PCDHGA4Q9Y5G9 962 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 SNX10Q9Y5X0 201 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 RP1P56715 2156 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 FLNCQ14315 2725 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 KRIT1O00522 736 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 RASGRP1O95267 797 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 FGFR1OPO95684 399 aaKnown RBP14.03□□□□□ -0.16
VPS29-201ENST00000360579 POP4O95707 220 aaKnown RBP14.03□□□□□ -0.16
VPS29-201ENST00000360579 CD82P27701 267 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 HTR1BP28222 390 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 SCNN1AP37088 669 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 RNASE9P60153 205 aaKnown RBP14.03□□□□□ -0.16
VPS29-201ENST00000360579 CCL7P80098 99 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 NFKB2Q00653 900 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 TTC7BQ86TV6 843 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 OR2AP1Q8NGE2 309 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 ATL2Q8NHH9 583 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 SHC3Q92529 594 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 CMKLR1Q99788 373 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 GDPD2Q9HCC8 539 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 SIRPGQ9P1W8 387 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 APEX2Q9UBZ4 518 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 HPCAL4Q9UM19 191 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 GPR34Q9UPC5 381 aa14.03□□□□□ -0.16
VPS29-201ENST00000360579 KIF26BQ2KJY2 2108 aa14.02□□□□□ -0.16
VPS29-201ENST00000360579 A0A1W2PQC6 194 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 A0A1W2PQM1 296 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 UGT2B4P06133 528 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 HGFP14210 728 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 TFE3P19532 575 aaPredicted RBP14.02□□□□□ -0.17
VPS29-201ENST00000360579 RAD51Q06609 339 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 TBR1Q16650 682 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 MYLK3Q32MK0 819 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 ISM2Q6H9L7 571 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 GDPD4Q6W3E5 623 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 CCNJLQ8IV13 435 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 HID1Q8IV36 788 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 DRC7Q8IY82 874 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 ELOA2Q8IYF1 753 aaPredicted RBP14.02□□□□□ -0.17
VPS29-201ENST00000360579 TP53I13Q8NBR0 393 aaPredicted RBP14.02□□□□□ -0.17
VPS29-201ENST00000360579 OR6K2Q8NGY2 324 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 ARHGEF2Q92974 986 aaKnown RBP14.02□□□□□ -0.17
VPS29-201ENST00000360579 KLHL32Q96NJ5 620 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 TBCBQ99426 244 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 EPAS1Q99814 870 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 B3GNT4Q9C0J1 378 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 SLC25A18Q9H1K4 315 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 GEMIN8Q9NWZ8 242 aaKnown RBP14.02□□□□□ -0.17
VPS29-201ENST00000360579 RABGEF1Q9UJ41 708 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 APPL1Q9UKG1 709 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 MAN1B1Q9UKM7 699 aa14.02□□□□□ -0.17
VPS29-201ENST00000360579 PPP1R3GB7ZBB8 358 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 MMP20O60882 483 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 CD160O95971 181 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 CELA2BP08218 269 aaPredicted RBP14.01□□□□□ -0.17
VPS29-201ENST00000360579 PNLIPP16233 465 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 GKP32189 559 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 MAPKAPK2P49137 400 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 SUOXP51687 545 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 TLE1Q04724 770 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 MORC3Q14149 939 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 LRRC14Q15048 493 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 KLHL40Q2TBA0 621 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 FAM102AQ5T9C2 384 aaPredicted RBP14.01□□□□□ -0.17
VPS29-201ENST00000360579 TMEM164Q5U3C3 297 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 GJB7Q6PEY0 223 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 GBP6Q6ZN66 633 aa14.01□□□□□ -0.17
VPS29-201ENST00000360579 TMEM35BQ8NCS4 154 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms