RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 VRTNQ9H8Y1 702 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 CCNB1IP1Q9NPC3 277 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 RAB6BQ9NRW1 208 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 UCKL1Q9NWZ5 548 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 NKX1-2Q9UD57 310 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 NDUFAF1Q9Y375 327 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 BCAS2O75934 225 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 TGFB3P10600 412 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 LBPP18428 481 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 CDH6P55285 790 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 FOLH1Q04609 750 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SEMA5AQ13591 1074 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 DGCR6Q14129 220 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SQLEQ14534 574 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 IL31Q6EBC2 164 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SCARA5Q6ZMJ2 495 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 HPS6Q86YV9 775 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 SLC44A2Q8IWA5 706 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 CPSF7Q8N684 471 aaKnown RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 ZBTB8BQ8NAP8 495 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 BBS1Q8NFJ9 593 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ISL2Q96A47 359 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 ASB9Q96DX5 294 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 COX4I2Q96KJ9 171 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 PRICKLE1Q96MT3 831 aaPredicted RBP6.47□□□□□ -1.37
VPS35-201ENST00000299138 KCNS3Q9BQ31 491 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 HPF1Q9NWY4 346 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 DNAJC16Q9Y2G8 782 aa6.47□□□□□ -1.37
VPS35-201ENST00000299138 NPIPA7E9PJI5 369 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 COQ9O75208 318 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 ENO2P09104 434 aaPredicted RBP6.46□□□□□ -1.37
VPS35-201ENST00000299138 NPIPA8P0DM63 369 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 RRM2P31350 389 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 CD97P48960 835 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 ZNF132P52740 706 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 KCNK10P57789 538 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 BNC1Q01954 994 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 TCP10Q12799 353 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 PLCL1Q15111 1095 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 MOGQ16653 247 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 RNF220Q5VTB9 566 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 TAF2Q6P1X5 1199 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 ARMCX2Q7L311 632 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 RAB11FIP2Q7L804 512 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 CENPLQ8N0S6 344 aaPredicted RBP6.46□□□□□ -1.37
VPS35-201ENST00000299138 DNAJB8Q8NHS0 232 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 USP13Q92995 863 aaPredicted RBP6.46□□□□□ -1.37
VPS35-201ENST00000299138 CCDC106Q9BWC9 280 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 SAV1Q9H4B6 383 aaPredicted RBP6.46□□□□□ -1.37
VPS35-201ENST00000299138 NXF1Q9UBU9 619 aaKnown RBP6.46□□□□□ -1.37
VPS35-201ENST00000299138 CDH7Q9ULB5 785 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 POMPQ9Y244 141 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 VPS9D1Q9Y2B5 631 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 PCDHA11Q9Y5I1 949 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 NPHS1O60500 1241 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 CCNKO75909 580 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 H6PDO95479 791 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 GH1P01241 217 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 C6orf222P0C671 652 aaPredicted RBP6.46□□□□□ -1.37
VPS35-201ENST00000299138 HSD3B1P14060 373 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 ETS2P15036 469 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 MSH3P20585 1137 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 TGFBR2P37173 567 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 ZBTB49Q6ZSB9 765 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 DQX1Q8TE96 717 aaKnown RBP6.46□□□□□ -1.37
VPS35-201ENST00000299138 RORBQ92753 470 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 SLC45A3Q96JT2 553 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 MIPEPQ99797 713 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 ACAT2Q9BWD1 397 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 CYTH4Q9UIA0 394 aa6.46□□□□□ -1.37
VPS35-201ENST00000299138 PPP1R11O60927 126 aaPredicted RBP6.46□□□□□ -1.38
VPS35-201ENST00000299138 STOMP27105 288 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 RAP1GAPP47736 663 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 SLC1A6P48664 564 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 ZNF235Q14590 738 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 KCNJ11Q14654 390 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 WDR72Q3MJ13 1102 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 ARHGEF16Q5VV41 709 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 KBTBD6Q86V97 674 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 GALNT13Q8IUC8 556 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 ATG16L2Q8NAA4 619 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 OR6P1Q8NGX9 317 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 CAB39LQ9H9S4 337 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 PCMTD2Q9NV79 361 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 MYH3P11055 1940 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 SAGE2PA6NJ88 616 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 CHURC1-FNTBB4DL54 471 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 PRODHO43272 600 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 FBXO21O94952 628 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 ATF6P18850 670 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 TM4SF1P30408 202 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 RFX3P48380 749 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 RXRGP48443 463 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 GALK1P51570 392 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 RNASE12Q5GAN4 147 aaKnown RBP6.46□□□□□ -1.38
VPS35-201ENST00000299138 CNSTQ6PJW8 725 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 CYP2U1Q7Z449 544 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 DEFB107AQ8IZN7 70 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 CYP4X1Q8N118 509 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 RAB2BQ8WUD1 216 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms