RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 MYLK3Q32MK0 819 aa20.78■□□□□ 0.92
SNX3-201ENST00000230085 CHERPQ8IWX8 916 aaKnown RBP20.78■□□□□ 0.92
SNX3-201ENST00000230085 DCLK2Q8N568 766 aa20.78■□□□□ 0.92
SNX3-201ENST00000230085 TMEM102Q8N9M5 508 aaPredicted RBP20.78■□□□□ 0.92
SNX3-201ENST00000230085 MAPK15Q8TD08 544 aa20.78■□□□□ 0.92
SNX3-201ENST00000230085 IGSF21Q96ID5 467 aa20.78■□□□□ 0.92
SNX3-201ENST00000230085 KCTD15Q96SI1 283 aaPredicted RBP20.78■□□□□ 0.92
SNX3-201ENST00000230085 HAUS8Q9BT25 410 aa20.78■□□□□ 0.92
SNX3-201ENST00000230085 LRRC40Q9H9A6 602 aa20.78■□□□□ 0.92
SNX3-201ENST00000230085 SPG21Q9NZD8 308 aa20.78■□□□□ 0.92
SNX3-201ENST00000230085 LMCD1Q9NZU5 365 aa20.78■□□□□ 0.92
SNX3-201ENST00000230085 ERI2A8K979 691 aaKnown RBP20.77■□□□□ 0.92
SNX3-201ENST00000230085 PIRO00625 290 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 FGF18O76093 207 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 FAM200BP0CF97 657 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 ZNF23P17027 643 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 ALDH3B2P48448 385 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 USP46P62068 366 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 TUBA4AP68366 448 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 PRKAA1Q13131 559 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 PPP6R3Q5H9R7 873 aaPredicted RBP20.77■□□□□ 0.92
SNX3-201ENST00000230085 DCLRE1AQ6PJP8 1040 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 CD300LGQ6UXG3 332 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 NAPRTQ6XQN6 538 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 NUP93Q8N1F7 819 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 BIRC8Q96P09 236 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 COLEC11Q9BWP8 271 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 TTYH1Q9H313 450 aaPredicted RBP20.77■□□□□ 0.92
SNX3-201ENST00000230085 PREBQ9HCU5 417 aa20.77■□□□□ 0.92
SNX3-201ENST00000230085 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.77■□□□□ 0.91
SNX3-201ENST00000230085 EPOPA6NHQ4 379 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 C8BP07358 591 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 CDK4P11802 303 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 NUDT2P50583 147 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 RPL14P50914 215 aaKnown RBP20.77■□□□□ 0.91
SNX3-201ENST00000230085 PPM1JQ5JR12 505 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 CASC4Q6P4E1 433 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 ZYG11AQ6WRX3 759 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 TTC30AQ86WT1 665 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 LILRA2Q8N149 483 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 PDCD6IPQ8WUM4 868 aaKnown RBP20.77■□□□□ 0.91
SNX3-201ENST00000230085 ZNF597Q96LX8 424 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 SAMD11Q96NU1 681 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 OR52B2Q96RD2 323 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 UHRF1Q96T88 793 aaPredicted RBP20.77■□□□□ 0.91
SNX3-201ENST00000230085 SYBUQ9NX95 663 aa20.77■□□□□ 0.91
SNX3-201ENST00000230085 MAGEB16A2A368 324 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 E9PBE3 544 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 KLHL41O60662 606 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 GABBR2O75899 941 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 COL6A2P12110 1019 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 PPM1AP35813 382 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 POLD2P49005 469 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 USP4Q13107 963 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 DCTN2Q13561 401 aaKnown RBP20.76■□□□□ 0.91
SNX3-201ENST00000230085 PDK1Q15118 436 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 SEL1L3Q68CR1 1132 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 UNC93AQ86WB7 457 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 SNX32Q86XE0 403 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 ERI1Q8IV48 349 aaKnown RBP20.76■□□□□ 0.91
SNX3-201ENST00000230085 FBXO22Q8NEZ5 403 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 GAB3Q8WWW8 586 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 TMEM169Q96HH4 297 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 GATA5Q9BWX5 397 aaPredicted RBP20.76■□□□□ 0.91
SNX3-201ENST00000230085 DHX35Q9H5Z1 703 aaKnown RBP20.76■□□□□ 0.91
SNX3-201ENST00000230085 EFCAB1Q9HAE3 211 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 ZBTB26Q9HCK0 441 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 PLXNA4Q9HCM2 1894 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 NSMCE4AQ9NXX6 385 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 SUCOQ9UBS9 1254 aaKnown RBP20.76■□□□□ 0.91
SNX3-201ENST00000230085 SARDHQ9UL12 918 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.76■□□□□ 0.91
SNX3-201ENST00000230085 CEPT1Q9Y6K0 416 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 AK5Q9Y6K8 562 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 TRANK1O15050 2925 aa20.76■□□□□ 0.91
SNX3-201ENST00000230085 TRIM64CA6NLI5 447 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 ZNF701M0R085 212 aaPredicted RBP20.75■□□□□ 0.91
SNX3-201ENST00000230085 RNF103O00237 685 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 RFXAPO00287 272 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 GRAP2O75791 330 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 RB1P06400 928 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 ZNF26P17031 533 aaPredicted RBP20.75■□□□□ 0.91
SNX3-201ENST00000230085 XRCC1P18887 633 aaPredicted RBP20.75■□□□□ 0.91
SNX3-201ENST00000230085 CDH2P19022 906 aaPredicted RBP20.75■□□□□ 0.91
SNX3-201ENST00000230085 BRCC3P46736 316 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 EMP3P54852 163 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 LILRA4P59901 499 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 CEACAM7Q14002 265 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 PAFAH1B3Q15102 231 aaKnown RBP20.75■□□□□ 0.91
SNX3-201ENST00000230085 LIPMQ5VYY2 423 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 BNIPLQ7Z465 357 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 RIN3Q8TB24 985 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 MAELQ96JY0 434 aaKnown RBP20.75■□□□□ 0.91
SNX3-201ENST00000230085 GPR62Q9BZJ7 368 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 DNAI2Q9GZS0 605 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 NMRAL1Q9HBL8 299 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 SLC17A6Q9P2U8 582 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 EYSQ5T1H1 3165 aa20.75■□□□□ 0.91
SNX3-201ENST00000230085 TMEM189-UBE2V1I3L0A0 370 aa20.74■□□□□ 0.91
SNX3-201ENST00000230085 SPTLC1O15269 473 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms