RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	TIMM44	O43615	452 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	TULP3	O75386	442 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	TCEA3	O75764	348 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	ASL	P04424	464 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	CTSO	P43234	321 aa	Predicted RBP	11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	RGR	P47804	291 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	CDK18	Q07002	472 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	MTM1	Q13496	603 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	OLIG2	Q13516	323 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	IHH	Q14623	411 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	PCSK7	Q16549	785 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	GAB4	Q2WGN9	574 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	UBAP2	Q5T6F2	1119 aa	Known RBP	11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	STEAP4	Q687X5	459 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	CASC4	Q6P4E1	433 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	NCEH1	Q6PIU2	408 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	CYS1	Q717R9	158 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	MPP5	Q8N3R9	675 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	OR2W6P	Q8NHA6	318 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	UHMK1	Q8TAS1	419 aa	Known RBP	11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	FGF14	Q92915	247 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	IFT43	Q96FT9	208 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	APOL2	Q9BQE5	337 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	WDR83	Q9BRX9	315 aa	Known RBP	11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	CEP44	Q9C0F1	390 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	UBE2Z	Q9H832	354 aa	Predicted RBP	11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	FAM53C	Q9NYF3	392 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	SAMD15	Q9P1V8	674 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	DEC1	Q9P2X7	70 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	ERVW-1	Q9UQF0	538 aa		11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	FCF1	Q9Y324	198 aa	Known RBP	11.91	□□□□□ -0.5
CLN6-223	ENST00000637823	TICRR	Q7Z2Z1	1910 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	GRXCR2	A6NFK2	248 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	OTOL1	A6NHN0	477 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	GOLGA6L10	A6NI86	522 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823		H3BQ06	376 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823		K7ERQ8	282 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	GSR	P00390	522 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SHBG	P04278	402 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	ATP5B	P06576	529 aa	Known RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	POLB	P06746	335 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	IVL	P07476	585 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SRPRA	P08240	638 aa	Known RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SRC	P12931	536 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	TPH1	P17752	444 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	PGAM1	P18669	254 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	HLA-DPA1	P20036	260 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SSTR1	P30872	391 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	GDI1	P31150	447 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	MAPK8	P45983	427 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SLC6A11	P48066	632 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	AP1S1	P61966	158 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SNRPD1	P62314	119 aa	Known RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	ZNF844	Q08AG5	666 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SMAD4	Q13485	552 aa	Known RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	HTR4	Q13639	388 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	GRM2	Q14416	872 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SLC1A5	Q15758	541 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	ITPRIPL2	Q3MIP1	535 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	PREPL	Q4J6C6	727 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	HSP90B2P	Q58FF3	399 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	PCID2	Q5JVF3	399 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	CEP85L	Q5SZL2	805 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	CERCAM	Q5T4B2	595 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	GRAMD4	Q6IC98	578 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	KDELC2	Q7Z4H8	507 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	PLPP6	Q8IY26	295 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SH2D3C	Q8N5H7	860 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	PCDH20	Q8N6Y1	951 aa	Known RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	GOLGA6L1	Q8N7Z2	621 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	ST13P5	Q8NFI4	369 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	MYLIP	Q8WY64	445 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	CFAP36	Q96G28	342 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	RPL10L	Q96L21	214 aa	Known RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	CDX2	Q99626	313 aa	Predicted RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SH3GL2	Q99962	352 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	PPCS	Q9HAB8	311 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	MED4	Q9NPJ6	270 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	PIH1D1	Q9NWS0	290 aa	Known RBP	11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SYBU	Q9NX95	663 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	RABGEF1	Q9UJ41	708 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	SOX13	Q9UN79	622 aa		11.9	□□□□□ -0.5
CLN6-223	ENST00000637823	RASGRF2	O14827	1237 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	TRIM24	O15164	1050 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	MBTPS2	O43462	519 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	ATP9B	O43861	1147 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	ZNF821	O75541	412 aa	Predicted RBP	11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	GJB3	O75712	270 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	NDST3	O95803	873 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	IGSF6	O95976	241 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	FGF1	P05230	155 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	MYZAP	P0CAP1	466 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	KCNA5	P22460	613 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	CA4	P22748	312 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	ADRA1D	P25100	572 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	STX2	P32856	288 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	NNMT	P40261	264 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	EIF2D	P41214	584 aa	Known RBP	11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	STK19	P49842	368 aa	Predicted RBP	11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms