RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZSCAN30Q86W11 494 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 TICAM1Q8IUC6 712 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 SFTPA2Q8IWL1 248 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 SRRM1Q8IYB3 904 aaKnown RBP14.78□□□□□ -0.04
CLN3-249ENST00000636685 CACNA2D3Q8IZS8 1091 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 UBR7Q8N806 425 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 GPR156Q8NFN8 814 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 ASB12Q8WXK4 309 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 MBNL1Q9NR56 388 aaKnown RBP14.78□□□□□ -0.04
CLN3-249ENST00000636685 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLN3-249ENST00000636685 APPL1Q9UKG1 709 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 KIAA1257Q9ULG3 409 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 VPS4AQ9UN37 437 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 TBC1D30Q9Y2I9 924 aa14.78□□□□□ -0.04
CLN3-249ENST00000636685 F8P00451 2351 aa14.77□□□□□ -0.04
CLN3-249ENST00000636685 SYNJ2BP-COX16A0A087WUM0 186 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 NEMP1O14524 444 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 TSPAN6O43657 245 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 FGF3P11487 239 aaPredicted RBP14.77□□□□□ -0.05
CLN3-249ENST00000636685 BRD2P25440 801 aaKnown RBP14.77□□□□□ -0.05
CLN3-249ENST00000636685 CNGA2Q16280 664 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 ARHGAP44Q17R89 818 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 ALG11Q2TAA5 492 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 CERCAMQ5T4B2 595 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 RD3Q7Z3Z2 195 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 GKN2Q86XP6 184 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 TEX19Q8NA77 164 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 RCBTB1Q8NDN9 531 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 TAAR9Q96RI9 348 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 C2orf49Q9BVC5 232 aaPredicted RBP14.77□□□□□ -0.05
CLN3-249ENST00000636685 ZNF768Q9H5H4 540 aaKnown RBP14.77□□□□□ -0.05
CLN3-249ENST00000636685 RDH14Q9HBH5 336 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 COX16Q9P0S2 106 aa14.77□□□□□ -0.05
CLN3-249ENST00000636685 SETD2Q9BYW2 2564 aaPredicted RBP14.76□□□□□ -0.05
CLN3-249ENST00000636685 CLDN11O75508 207 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 RHOCP08134 193 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 GLB1P16278 677 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 PDCP20941 246 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 OAS2P29728 719 aaKnown RBP14.76□□□□□ -0.05
CLN3-249ENST00000636685 BLKP51451 505 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 DNA2P51530 1060 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 CLCN6P51797 869 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 YWHAEP62258 255 aaKnown RBP14.76□□□□□ -0.05
CLN3-249ENST00000636685 CDC20Q12834 499 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 EIF4EBP2Q13542 120 aaPredicted RBP14.76□□□□□ -0.05
CLN3-249ENST00000636685 MAP9Q49MG5 647 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 BEND5Q7L4P6 421 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 GALNT11Q8NCW6 608 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 APOBEC4Q8WW27 367 aaKnown RBP14.76□□□□□ -0.05
CLN3-249ENST00000636685 SLC45A3Q96JT2 553 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 HEPHQ9BQS7 1158 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 ZSCAN16Q9H4T2 348 aaPredicted RBP14.76□□□□□ -0.05
CLN3-249ENST00000636685 ST7Q9NRC1 585 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 PPP4R2Q9NY27 417 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 AKAP7Q9P0M2 348 aaPredicted RBP14.76□□□□□ -0.05
CLN3-249ENST00000636685 PCDHGA3Q9Y5H0 932 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 B3GALT1Q9Y5Z6 326 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 ZFHX3Q15911 3703 aa14.76□□□□□ -0.05
CLN3-249ENST00000636685 C16orf96A6NNT2 1141 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 RNF225M0QZC1 329 aaPredicted RBP14.75□□□□□ -0.05
CLN3-249ENST00000636685 SART1O43290 800 aaKnown RBP14.75□□□□□ -0.05
CLN3-249ENST00000636685 RAD1O60671 282 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 CUTAO60888 179 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 PPP6R2O75170 966 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 RASGRP1O95267 797 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 SYT1P21579 422 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 LRMPQ12912 555 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 NFIL3Q16649 462 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 CBWD6Q4V339 395 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 CBWD3Q5JTY5 395 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 CBWD5Q5RIA9 395 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 ATP1A1-AS1Q5TC04 95 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 TMEM270Q6UE05 265 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 HEATR4Q86WZ0 1026 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 ZDHHC6Q9H6R6 413 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 FAM204AQ9H8W3 233 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 LRIT1Q9P2V4 623 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 HS3ST4Q9Y661 456 aa14.75□□□□□ -0.05
CLN3-249ENST00000636685 ANKRD36A6QL64 1941 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 OTOGQ6ZRI0 2925 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 A0A0D9SEW6 157 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 EFCAB7A8K855 629 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 CAPN5O15484 640 aaPredicted RBP14.74□□□□□ -0.05
CLN3-249ENST00000636685 MMP20O60882 483 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 PAEPP09466 180 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 PNLIPP16233 465 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 GKP32189 559 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 CCR1P32246 355 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 CCNHP51946 323 aaPredicted RBP14.74□□□□□ -0.05
CLN3-249ENST00000636685 CDH4P55283 916 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 MCCD1P59942 119 aaPredicted RBP14.74□□□□□ -0.05
CLN3-249ENST00000636685 B4GALNT1Q00973 533 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 ADAM9Q13443 819 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 ARHGEF7Q14155 803 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 TAF5Q15542 800 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 AMZ1Q400G9 498 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 ALFQ53S48 1182 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 KCTD16Q68DU8 428 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 ENPP7Q6UWV6 458 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 MAMDC2Q7Z304 686 aaPredicted RBP14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms