RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 VILLO15195 856 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 SNAP91O60641 907 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 MT-CO1P00395 513 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 RHOQP17081 205 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 KDELR1P24390 212 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 PTPN7P35236 360 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 DRD3P35462 400 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 CDKN2BP42772 138 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 MAPKAPK2P49137 400 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 NUMBP49757 651 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 ADPRHP54922 357 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 BNC1Q01954 994 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 ADCY2Q08462 1091 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 NAA30Q147X3 362 aaPredicted RBP12.87□□□□□ -0.35
PNKP-217ENST00000625216 PPP2R5EQ16537 467 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 TAZQ16635 292 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 LONRF2Q1L5Z9 754 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 TEX35Q5T0J7 233 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 ZFYVE27Q5T4F4 411 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 MANEALQ5VSG8 457 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.87□□□□□ -0.35
PNKP-217ENST00000625216 DBX2Q6ZNG2 339 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 Q6ZVU0 165 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 ADAT2Q7Z6V5 191 aaKnown RBP12.87□□□□□ -0.35
PNKP-217ENST00000625216 RCOR2Q8IZ40 523 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 TMIEQ8NEW7 156 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 PIP4K2CQ8TBX8 421 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 CNTNAP3BQ96NU0 1288 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 KCTD15Q96SI1 283 aaPredicted RBP12.87□□□□□ -0.35
PNKP-217ENST00000625216 SPON2Q9BUD6 331 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 AP1M1Q9BXS5 423 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 ACE2Q9BYF1 805 aaPredicted RBP12.87□□□□□ -0.35
PNKP-217ENST00000625216 CNTNAP3Q9BZ76 1288 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 MAGEB5Q9BZ81 275 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 OSBPL8Q9BZF1 889 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 CEP44Q9C0F1 390 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 PCDH18Q9HCL0 1135 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 TM7SF3Q9NS93 570 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 FZD10Q9ULW2 581 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 AP4E1Q9UPM8 1137 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 PCDHB9Q9Y5E1 797 aa12.87□□□□□ -0.35
PNKP-217ENST00000625216 ASCC3Q8N3C0 2202 aaKnown RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3DA0A087WVF3 549 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3IA0A087WXS9 549 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3EA0A087X179 549 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3KA0A087X1G2 549 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3FA6NER0 549 aaPredicted RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3LB9A6J9 549 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 CBX4O00257 560 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 LATO43561 262 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 PLRG1O43660 514 aaKnown RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 SH3BP5O60239 455 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 ZMPSTE24O75844 475 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 PRNPP04156 253 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3HP0C7X1 549 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 KRT10P13645 584 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 CHRNA3P32297 505 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 RECQLP46063 649 aaPredicted RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 AIF1P55008 147 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 CDH6P55285 790 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 C21orf59P57076 290 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 GEMIN4P57678 1058 aaKnown RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 COPS2P61201 443 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 SIM1P81133 766 aaPredicted RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 GNA12Q03113 381 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 SCAPQ12770 1279 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 MMRN1Q13201 1228 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 KLF1Q13351 362 aaPredicted RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 DPYSL3Q14195 570 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TRIP6Q15654 476 aaKnown RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 KIF19Q2TAC6 998 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 ERMARDQ5T6L9 678 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3GQ6DHY5 549 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3CQ6IPX1 549 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 NEK5Q6P3R8 708 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 PRPF39Q86UA1 669 aaKnown RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 NAXDQ8IW45 347 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 PLPP6Q8IY26 295 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D3Q8IZP1 549 aaPredicted RBP12.86□□□□□ -0.35
PNKP-217ENST00000625216 PYROXD2Q8N2H3 581 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 OR7D4Q8NG98 312 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 OR2A12Q8NGT7 310 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 FAM71BQ8TC56 605 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TBC1D31Q96DN5 1066 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 HEMGNQ9BXL5 484 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 MAGEH1Q9H213 219 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 ATP13A1Q9HD20 1204 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 TMEM248Q9NWD8 314 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 SARDHQ9UL12 918 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 DMTF1Q9Y222 760 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 SNX11Q9Y5W9 270 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 PCDH15Q96QU1 1955 aa12.86□□□□□ -0.35
PNKP-217ENST00000625216 DOCK4Q8N1I0 1966 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 UQCRHLA0A096LP55 91 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 EFCAB8A8MWE9 144 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 K7ERQ8 282 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 KRIT1O00522 736 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 CTIFO43310 598 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 SMAD6O43541 496 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 BNIP3LO60238 219 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms