RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 PLAC1Q9HBJ0 212 aa5.45□□□□□ -1.54
VPS29-212ENST00000621131 ZNF304Q9HCX3 659 aa5.45□□□□□ -1.54
VPS29-212ENST00000621131 CWC25Q9NXE8 425 aaPredicted RBP5.45□□□□□ -1.54
VPS29-212ENST00000621131 PLK2Q9NYY3 685 aa5.45□□□□□ -1.54
VPS29-212ENST00000621131 FBXO4Q9UKT5 387 aa5.45□□□□□ -1.54
VPS29-212ENST00000621131 COPG1Q9Y678 874 aaKnown RBP5.45□□□□□ -1.54
VPS29-212ENST00000621131 TJP1Q07157 1748 aa5.45□□□□□ -1.54
VPS29-212ENST00000621131 UTYO14607 1347 aa5.45□□□□□ -1.54
VPS29-212ENST00000621131 ANKRD36CQ5JPF3 1778 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 NHSQ6T4R5 1651 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3DA0A087WVF3 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3IA0A087WXS9 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3EA0A087X179 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3KA0A087X1G2 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 CLEC18AA5D8T8 446 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3BA6NDS4 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3FA6NER0 549 aaPredicted RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 BECN2A8MW95 431 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3LB9A6J9 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 MSI1O43347 362 aaKnown RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3HP0C7X1 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 AKT1P31749 480 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 SLC16A2P36021 539 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 NEK3P51956 506 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 KRTAP10-6P60371 365 aaPredicted RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 GCKRQ14397 625 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TRIM60Q495X7 471 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TTC22Q5TAA0 569 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 CCDC181Q5TID7 509 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 ZNF324BQ6AW86 544 aaPredicted RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3GQ6DHY5 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3CQ6IPX1 549 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 PPP1R42Q7Z4L9 355 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 SPATA2LQ8IUW3 424 aaPredicted RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 SYTL1Q8IYJ3 562 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 DCP1BQ8IZD4 617 aaKnown RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 TBC1D3Q8IZP1 549 aaPredicted RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 KDM1BQ8NB78 822 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 CLEC18CQ8NCF0 446 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 CCDC191Q8NCU4 936 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 SPATA3Q8NHX4 192 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 RSC1A1Q92681 617 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 SORBS1Q9BX66 1292 aaKnown RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.44□□□□□ -1.54
VPS29-212ENST00000621131 ARNT2Q9HBZ2 717 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 HIF1ANQ9NWT6 349 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 CNTN6Q9UQ52 1028 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 EXOC6BQ9Y2D4 811 aa5.44□□□□□ -1.54
VPS29-212ENST00000621131 PALLDQ8WX93 1383 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 FAM90A18PA6NE21 464 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 FAM90A16PA6NEW6 464 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 FAM90A9PA6NNJ1 464 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 SLC38A8A6NNN8 435 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 FAM90A5PA8MXJ8 464 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 HOXC6P09630 235 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 IFIT2P09913 472 aaKnown RBP5.43□□□□□ -1.54
VPS29-212ENST00000621131 FAM90A15PP0C7V4 464 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 FAM90A14PP0C7W9 464 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 TGFB3P10600 412 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 MX1P20591 662 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 RFX5P48382 616 aaPredicted RBP5.43□□□□□ -1.54
VPS29-212ENST00000621131 POLE2P56282 527 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 ROR2Q01974 943 aaKnown RBP5.43□□□□□ -1.54
VPS29-212ENST00000621131 ZBTB16Q05516 673 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 PICALMQ13492 652 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 INO80DQ53TQ3 878 aaPredicted RBP5.43□□□□□ -1.54
VPS29-212ENST00000621131 PRR26Q8N8Z3 221 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 ENGASEQ8NFI3 743 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 GABPB2Q8TAK5 448 aaPredicted RBP5.43□□□□□ -1.54
VPS29-212ENST00000621131 FAM110DQ8TAY7 271 aaPredicted RBP5.43□□□□□ -1.54
VPS29-212ENST00000621131 NUDCD2Q8WVJ2 157 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 FAM84BQ96KN1 310 aaPredicted RBP5.43□□□□□ -1.54
VPS29-212ENST00000621131 NPAS1Q99742 590 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 PNRC2Q9NPJ4 139 aaKnown RBP5.43□□□□□ -1.54
VPS29-212ENST00000621131 TTC41PQ6P2S7 1318 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 MAP3K15Q6ZN16 1313 aa5.43□□□□□ -1.54
VPS29-212ENST00000621131 AK9Q5TCS8 1911 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 TRBV5-7A0A0A0MS05 114 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 INAFM1C9JVW0 142 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 ASNA1O43681 348 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 REC8O95072 547 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 LARGE1O95461 756 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 IGKV5-2P06315 115 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 ARSBP15848 533 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 MCCP23508 829 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 CHRNA5P30532 468 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 PIP4K2AP48426 406 aaPredicted RBP5.42□□□□□ -1.54
VPS29-212ENST00000621131 RHAGQ02094 409 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 SF3A3Q12874 501 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS29-212ENST00000621131 TRAF1Q13077 416 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 ASIC2Q16515 512 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 ALG10Q5BKT4 473 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 ARL13AQ5H913 290 aaPredicted RBP5.42□□□□□ -1.54
VPS29-212ENST00000621131 ALG10BQ5I7T1 473 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 SRLQ86TD4 932 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 RBM23Q86U06 439 aaKnown RBP5.42□□□□□ -1.54
VPS29-212ENST00000621131 CNTROBQ8N137 903 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 SLC25A41Q8N5S1 370 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 OR1N1Q8NGS0 311 aa5.42□□□□□ -1.54
VPS29-212ENST00000621131 STYXQ8WUJ0 223 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms