RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 BBS5Q8N3I7 341 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 LZICQ8WZA0 190 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 ASB9Q96DX5 294 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 ZNF597Q96LX8 424 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 RANBP9Q96S59 729 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 MPHOSPH6Q99547 160 aaKnown RBP18.54■□□□□ 0.56
UPF1-210ENST00000600689 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.54■□□□□ 0.56
UPF1-210ENST00000600689 ANKRD12Q6UB98 2062 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 BRCA2P51587 3418 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 EEF2KO00418 725 aaKnown RBP18.53■□□□□ 0.56
UPF1-210ENST00000600689 SDHDO14521 159 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 DPYSL4O14531 572 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 CAPRIN1Q14444 709 aaKnown RBP18.53■□□□□ 0.56
UPF1-210ENST00000600689 ZBTB8BQ8NAP8 495 aaPredicted RBP18.53■□□□□ 0.56
UPF1-210ENST00000600689 SLC2A14Q8TDB8 520 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 NAT9Q9BTE0 207 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 TUBGCP4Q9UGJ1 667 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 CLDN5O00501 218 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 FBP2O00757 339 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 ZBTB11O95625 1053 aaPredicted RBP18.53■□□□□ 0.56
UPF1-210ENST00000600689 JCHAINP01591 159 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 ADIGQ0VDE8 80 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 CYS1Q717R9 158 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 OTOP3Q7RTS5 596 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 TMEM110Q86TL2 294 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 SETD3Q86TU7 594 aaPredicted RBP18.53■□□□□ 0.56
UPF1-210ENST00000600689 LRRC43Q8N309 656 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 SPATA22Q8NHS9 363 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 ELMO2Q96JJ3 720 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 ZNF408Q9H9D4 720 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 POLR1BQ9H9Y6 1135 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 SMOXQ9NWM0 555 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 TNFSF13BQ9Y275 285 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 PCDHGA4Q9Y5G9 962 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 C22orf31O95567 290 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 AHSGP02765 367 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 PTPN3P26045 913 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 LRPAP1P30533 357 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 MAGEA8P43361 318 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 ALDH3B2P48448 385 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 RHDQ02161 417 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 TTLL4Q14679 1199 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 ADRM1Q16186 407 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 ANO4Q32M45 955 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 TBCELQ5QJ74 424 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 SYPL2Q5VXT5 272 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 GRAMD4Q6IC98 578 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 CLEC14AQ86T13 490 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 PSTKQ8IV42 348 aaKnown RBP18.53■□□□□ 0.56
UPF1-210ENST00000600689 KDM1BQ8NB78 822 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 TTC16Q8NEE8 873 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 CXorf21Q9HAI6 301 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 FAIMQ9NVQ4 179 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 CACNA2D2Q9NY47 1150 aa18.53■□□□□ 0.56
UPF1-210ENST00000600689 ANK1P16157 1881 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 SH3PXD2BA1X283 911 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 TIMM44O43615 452 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 SLC35E2BP0CK96 405 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 CHRM3P20309 590 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 EEF1B2P24534 225 aaKnown RBP18.52■□□□□ 0.56
UPF1-210ENST00000600689 RXRGP48443 463 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 CSE1LP55060 971 aaKnown RBP18.52■□□□□ 0.56
UPF1-210ENST00000600689 C1QTNF8P60827 252 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 NSUN2Q08J23 767 aaKnown RBP eCLIP18.52■□□□□ 0.56
UPF1-210ENST00000600689 GEN1Q17RS7 908 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 CENPLQ8N0S6 344 aaPredicted RBP18.52■□□□□ 0.56
UPF1-210ENST00000600689 TXNDC5Q8NBS9 432 aaKnown RBP18.52■□□□□ 0.56
UPF1-210ENST00000600689 PDZD7Q9H5P4 517 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 PRDM16Q9HAZ2 1276 aa18.52■□□□□ 0.56
UPF1-210ENST00000600689 UBDO15205 165 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 HBP1O60381 514 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 GABRB3P28472 473 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 YBX1P67809 324 aaKnown RBP18.52■□□□□ 0.55
UPF1-210ENST00000600689 ARHGAP1Q07960 439 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 CD300CQ08708 224 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 TRAF2Q12933 501 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 PMS2P3Q13401 168 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 BORAQ6PGQ7 559 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 FAM35AQ86V20 835 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 DHFR2Q86XF0 187 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 MUC3BQ9H195 1237 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 DUS2Q9NX74 493 aaKnown RBP18.52■□□□□ 0.55
UPF1-210ENST00000600689 ACOT9Q9Y305 439 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 PTGDR2Q9Y5Y4 395 aa18.52■□□□□ 0.55
UPF1-210ENST00000600689 AURKAO14965 403 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 GAS2O43903 313 aaKnown RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 OCM2P0CE71 109 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 OCMP0CE72 109 aaPredicted RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 ERCC2P18074 760 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 ATP6V1B2P21281 511 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 KCNA5P22460 613 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 NUP107P57740 925 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 TXNL4AP83876 142 aaKnown RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 GNA12Q03113 381 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 ZBTB17Q13105 803 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 SEPT6Q14141 434 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 KIF19Q2TAC6 998 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 TMEM151AQ8N4L1 468 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 HMGCLL1Q8TB92 370 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 INIPQ9NRY2 104 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms