RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TGIF1Q15583 401 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 HSP90AA4PQ58FG1 418 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 ATXN7L2Q5T6C5 722 aaPredicted RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 FAM102AQ5T9C2 384 aaPredicted RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 KCTD16Q68DU8 428 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 NEK5Q6P3R8 708 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 KYAT3Q6YP21 454 aaKnown RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 B3GNT8Q7Z7M8 397 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 PARGQ86W56 976 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 SFTPA2Q8IWL1 248 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 SLC35F3Q8IY50 421 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 CACTIN-AS1Q8N1I8 211 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 EMC1Q8N766 993 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 DCAF4L2Q8NA75 395 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 SHC3Q92529 594 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 VOPP1Q96AW1 172 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 CFAP57Q96MR6 1250 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 PSMG3-AS1Q96PY0 264 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 HDAC8Q9BY41 377 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 FOXP3Q9BZS1 431 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 ATP13A1Q9HD20 1204 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 MBNL1Q9NR56 388 aaKnown RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 GPR27Q9NS67 375 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 ASNSD1Q9NWL6 643 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.8□□□□□ -1
SHKBP1-220ENST00000599716 SIRPGQ9P1W8 387 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 HECAQ9UBI9 543 aaPredicted RBP8.8□□□□□ -1
SHKBP1-220ENST00000599716 APEX2Q9UBZ4 518 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 ZNF212Q9UDV6 495 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 RABGEF1Q9UJ41 708 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 DNAJC12Q9UKB3 198 aa8.8□□□□□ -1
SHKBP1-220ENST00000599716 NIPBLQ6KC79 2804 aaeCLIP8.79□□□□□ -1
SHKBP1-220ENST00000599716 HIVEP1P15822 2718 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 BICDL2A1A5D9 508 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 NEMP2A6NFY4 417 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 C16orf96A6NNT2 1141 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 FAM72CH0Y354 149 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 NEMP1O14524 444 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 EFSO43281 561 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 MMP20O60882 483 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 DXOO77932 396 aaKnown RBP8.79□□□□□ -1
SHKBP1-220ENST00000599716 TNFSF15O95150 251 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 RBMS1P29558 406 aaKnown RBP8.79□□□□□ -1
SHKBP1-220ENST00000599716 L1CAMP32004 1257 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 KRT9P35527 623 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 IGFALSP35858 605 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 ERVPABLB-1P60509 514 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 RPS21P63220 83 aaKnown RBP8.79□□□□□ -1
SHKBP1-220ENST00000599716 ATP11AP98196 1134 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 CLN3Q13286 438 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 CAMK4Q16566 473 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 MEA1Q16626 185 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 CDO1Q16878 200 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 EXOC3L4Q17RC7 722 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 CARD16Q5EG05 197 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 PRRT3Q5FWE3 981 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 FAM72AQ5TYM5 149 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 FAM72DQ6L9T8 149 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 ZCCHC8Q6NZY4 707 aaKnown RBP8.79□□□□□ -1
SHKBP1-220ENST00000599716 GBP6Q6ZN66 633 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 VPS36Q86VN1 386 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 FAM72BQ86X60 149 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 IRF2BP1Q8IU81 584 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 CCDC114Q96M63 670 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 TIGD1Q96MW7 591 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 SLC46A1Q96NT5 459 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 PPP1R9BQ96SB3 815 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 HEPHQ9BQS7 1158 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 LRRC61Q9BV99 259 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 CLPBQ9H078 707 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 THSD1Q9NS62 852 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 GULP1Q9UBP9 304 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 APOBEC3BQ9UH17 382 aaKnown RBP8.79□□□□□ -1
SHKBP1-220ENST00000599716 DNAI1Q9UI46 699 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 PCDHGC3Q9UN70 934 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 COQ6Q9Y2Z9 468 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 LRRK1Q38SD2 2015 aa8.79□□□□□ -1
SHKBP1-220ENST00000599716 EME2A4GXA9 379 aaPredicted RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 CLEC18AA5D8T8 446 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 KRIT1O00522 736 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 FPGTO14772 594 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 YY2O15391 372 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 GNA14O95837 355 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 UGT2B4P06133 528 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 GP1BAP07359 652 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 TSHRP16473 764 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 ITGB7P26010 798 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 RABIFP47224 123 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 DUSP3P51452 185 aaPredicted RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 PFN3P60673 137 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 GNA12Q03113 381 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 PTK2Q05397 1052 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 NFATC3Q12968 1075 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 SGCGQ13326 291 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 RAPGEF1Q13905 1077 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 NR0B2Q15466 257 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 C15orf59Q2T9L4 293 aaPredicted RBP8.78□□□□□ -1
SHKBP1-220ENST00000599716 BRMS1LQ5PSV4 323 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 C6orf132Q5T0Z8 1188 aa8.78□□□□□ -1
SHKBP1-220ENST00000599716 KIAA1161Q6NSJ0 714 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms