RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 AFMIDQ63HM1 303 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 C19orf48Q6RUI8 117 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 SARM1Q6SZW1 724 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 HORMAD1Q86X24 394 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 SKA1Q96BD8 255 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 DEF6Q9H4E7 631 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 ZWILCHQ9H900 591 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 TM7SF3Q9NS93 570 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.34■□□□□ 0.05
TRIM28-205ENST00000595028 ZNHIT6Q9NWK9 470 aaKnown RBP15.34■□□□□ 0.05
TRIM28-205ENST00000595028 CWC15Q9P013 229 aaKnown RBP15.34■□□□□ 0.05
TRIM28-205ENST00000595028 LHX3Q9UBR4 397 aa15.34■□□□□ 0.05
TRIM28-205ENST00000595028 UBA2Q9UBT2 640 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-205ENST00000595028 ANKRD36A6QL64 1941 aa15.33■□□□□ 0.05
TRIM28-205ENST00000595028 A0A1W2PQU0 124 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 ARHGAP42A6NI28 874 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 KRIT1O00522 736 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 PRAMEF11O60813 436 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 UGT2B4P06133 528 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 CCT8P50990 548 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 HNRNPDQ14103 355 aaKnown RBP15.33■□□□□ 0.04
TRIM28-205ENST00000595028 MYLK3Q32MK0 819 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 SLC45A4Q5BKX6 768 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 TXNRD3NBQ6F5E7 133 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 PDZD3Q86UT5 571 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 ARHGAP12Q8IWW6 846 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 NETO2Q8NC67 525 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 TEKT4Q8WW24 435 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 CTNNBL1Q8WYA6 563 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-205ENST00000595028 HSPH1Q92598 858 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 OSBPL1AQ9BXW6 950 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 PACSIN1Q9BY11 444 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 SLC39A8Q9C0K1 460 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 GPSM3Q9Y4H4 160 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 PCDHGB2Q9Y5G2 931 aa15.33■□□□□ 0.04
TRIM28-205ENST00000595028 C16orf96A6NNT2 1141 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 H0Y8X5 98 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 J3KR12 359 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 MYO1FO00160 1098 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 AP1G1O43747 822 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 SH3BP5O60239 455 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 PCDH8O95206 1070 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 POP4O95707 220 aaKnown RBP15.32■□□□□ 0.04
TRIM28-205ENST00000595028 RARAP10276 462 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 PRLRP16471 622 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 ARL4AP40617 200 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 ABL2P42684 1182 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 PAPOLAP51003 745 aaKnown RBP15.32■□□□□ 0.04
TRIM28-205ENST00000595028 ADKP55263 362 aaKnown RBP15.32■□□□□ 0.04
TRIM28-205ENST00000595028 NXPH1P58417 271 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 TSR1Q2NL82 804 aaKnown RBP15.32■□□□□ 0.04
TRIM28-205ENST00000595028 ZNF284Q2VY69 593 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 TMEM259Q4ZIN3 620 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 ZNF805Q5CZA5 627 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 FBXL19Q6PCT2 694 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 POLNQ7Z5Q5 900 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 PROSER1Q86XN7 944 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 CNGA4Q8IV77 575 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 TMEM145Q8NBT3 493 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 EXOC2Q96KP1 924 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 CAMK1GQ96NX5 476 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 SP110Q9HB58 689 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 PCDH18Q9HCL0 1135 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 CTTNBP2NLQ9P2B4 639 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 UVRAGQ9P2Y5 699 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 FADS3Q9Y5Q0 445 aa15.32■□□□□ 0.04
TRIM28-205ENST00000595028 A0A1B0GTQ1 180 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 SPAARA0A1B0GVQ0 90 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 PRAMEF26H0Y7S4 382 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 DFFAO00273 331 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 FLRT2O43155 660 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 AKR1B10O60218 316 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 CAPNS1P04632 268 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 H2AFZP0C0S5 128 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 FAM193AP78312 1265 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 SIM1P81133 766 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-205ENST00000595028 RAD51Q06609 339 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 CYTH1Q15438 398 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 SEL1L3Q68CR1 1132 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 KIAA1161Q6NSJ0 714 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 H2AFVQ71UI9 128 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 IQCHQ86VS3 1027 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 LZTR1Q8N653 840 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 MFSD2AQ8NA29 543 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 BAHD1Q8TBE0 780 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-205ENST00000595028 TSC1Q92574 1164 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 RAB7BQ96AH8 199 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 KLHL32Q96NJ5 620 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 CSPG4P5Q96PW8 444 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 GDF3Q9NR23 364 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 PCOLCE2Q9UKZ9 415 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 ZFR2Q9UPR6 939 aaKnown RBP15.31■□□□□ 0.04
TRIM28-205ENST00000595028 CA5BQ9Y2D0 317 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 MFHAS1Q9Y4C4 1052 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 SHROOM3Q8TF72 1996 aa15.31■□□□□ 0.04
TRIM28-205ENST00000595028 TLR4O00206 839 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 KCNK3O14649 394 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 SLC31A1O15431 190 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 SPINT1O43278 529 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 PCDHGA12O60330 932 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms