RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 RCAN1P53805 252 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 NCKAP1LP55160 1127 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 NPEPPSP55786 919 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TAP1Q03518 808 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 CRYMQ14894 314 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 SLMAPQ14BN4 828 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TTC31Q49AM3 519 aaPredicted RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 KRBOX4Q5JUW0 171 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 CERCAMQ5T4B2 595 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 ARHGAP40Q5TG30 622 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 AGBL4Q5VU57 503 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3GQ6DHY5 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3CQ6IPX1 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TATDN1Q6P1N9 297 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 ALKBH5Q6P6C2 394 aaKnown RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 TMEM154Q6P9G4 183 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 SLC23A3Q6PIS1 610 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 BTN2A1Q7KYR7 527 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 ZNF804AQ7Z570 1209 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 IGDCC3Q8IVU1 814 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 CCDC105Q8IYK2 499 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3Q8IZP1 549 aaPredicted RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 TMCO5AQ8N6Q1 288 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 POC5Q8NA72 575 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TDRD5Q8NAT2 981 aaKnown RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 POGLUT1Q8NBL1 392 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 SPC24Q8NBT2 197 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 PIGOQ8TEQ8 1089 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 ARHGEF2Q92974 986 aaKnown RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 LPPQ93052 612 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 SECISBP2LQ93073 1101 aaKnown RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 INTS12Q96CB8 462 aaKnown RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 KLHL29Q96CT2 875 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 SIPA1Q96FS4 1042 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 GCNAQ96QF7 691 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 HAPLN3Q96S86 360 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 GPHA2Q96T91 129 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 PAAF1Q9BRP4 392 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 C11orf84Q9BUA3 381 aaPredicted RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 ZCWPW1Q9H0M4 648 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 OR10A2Q9H208 303 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 SLC6A15Q9H2J7 730 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 SH2D4AQ9H788 454 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 LTB4R2Q9NPC1 389 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 ARHGEF3Q9NR81 526 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 PDRG1Q9NUG6 133 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 FBXO28Q9NVF7 368 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 HCN3Q9P1Z3 774 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 NDRG4Q9ULP0 352 aaKnown RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 ADAMTS20P59510 1910 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 CLRN2A0PK11 232 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 URADA6NGE7 173 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 MBD3L5A6NJ08 208 aaPredicted RBP6.04□□□□□ -1.44
VPS53-219ENST00000576019 BTBD18B2RXH4 712 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 KBTBD13C9JR72 458 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 M0QZQ0 153 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CTDSP2O14595 271 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 B3GALNT1O75752 331 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CSPG5O95196 566 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 OR2C1O95371 312 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 PLATP00750 562 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 TGFB1P01137 390 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CSF1RP07333 972 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 TUBBP07437 444 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 ZNF888P0CJ79 500 aaPredicted RBP6.04□□□□□ -1.44
VPS53-219ENST00000576019 TNNT1P13805 278 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 ATF2P15336 505 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CYP2B6P20813 491 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CPT2P23786 658 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 GPTP24298 496 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 PRKAR1BP31321 381 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 NRIP1P48552 1158 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 LMAN1P49257 510 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 MRPL12P52815 198 aaKnown RBP6.04□□□□□ -1.44
VPS53-219ENST00000576019 EIF3BP55884 814 aaKnown RBP6.04□□□□□ -1.44
VPS53-219ENST00000576019 RPL15P61313 204 aaKnown RBP6.04□□□□□ -1.44
VPS53-219ENST00000576019 PIGFQ07326 219 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 BFSP2Q13515 415 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 NTRK2Q16620 822 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 GAGE13Q4V321 117 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 KRTCAP3Q53RY4 240 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 RUNDC3AQ59EK9 446 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CCDC158Q5M9N0 1113 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 ISM2Q6H9L7 571 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 RGS7BPQ6MZT1 257 aaPredicted RBP6.04□□□□□ -1.44
VPS53-219ENST00000576019 CCDC144NLQ6NUI1 221 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 ZNF790Q6PG37 636 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CNSTQ6PJW8 725 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 MTHFD1LQ6UB35 978 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 GPRIN1Q7Z2K8 1008 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 PIWIL3Q7Z3Z3 882 aaKnown RBP6.04□□□□□ -1.44
VPS53-219ENST00000576019 DNAAF5Q86Y56 855 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 BRSK2Q8IWQ3 736 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 UNC45BQ8IWX7 931 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 SLC15A3Q8IY34 581 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 TMEM116Q8NCL8 245 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 TNIP2Q8NFZ5 429 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 ABHD4Q8TB40 342 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CLEC4CQ8WTT0 213 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms