RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 PRDM16Q9HAZ2 1276 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 ABCB10Q9NRK6 738 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SNX15Q9NRS6 342 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 COX16Q9P0S2 106 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SATB2Q9UPW6 733 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 PRELID1Q9Y255 219 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 INPP4BO15327 924 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 B4GALT5O43286 388 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 POLBP06746 335 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 ZNF26P17031 533 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 PRKCHP24723 683 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 GRIA4P48058 902 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SERPINB10P48595 397 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SLC7A2P52569 658 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 NFATC3Q12968 1075 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 PRKAA1Q13131 559 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 NOMO1Q15155 1222 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 EPGNQ6UW88 154 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 ZNF354CQ86Y25 554 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 PSMA8Q8TAA3 256 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 TRUB1Q8WWH5 349 aaKnown RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 RANBP9Q96S59 729 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 C9orf16Q9BUW7 83 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SOX17Q9H6I2 414 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 POLE4Q9NR33 117 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 CNOT6Q9ULM6 557 aaKnown RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 PRSS51A0A1B0GVH4 220 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 A6NL46 340 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 E7ENX8 843 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 CLPXO76031 633 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 MT-ND1P03886 318 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 ENO2P09104 434 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 ALOX5P09917 674 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 TFEBP19484 476 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 LRPAP1P30533 357 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 ATICP31939 592 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 EPHX2P34913 555 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 MERTKQ12866 999 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 IFRD2Q12894 506 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 USP10Q14694 798 aaKnown RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 ARL13AQ5H913 290 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SAMD4BQ5PRF9 694 aaKnown RBP9.68□□□□□ -0.86
CCDC40-212ENST00000574799 MARCH8Q5T0T0 291 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 DENND1BQ6P3S1 775 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SH2D5Q6ZV89 423 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 AKAP14Q86UN6 197 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 TTC16Q8NEE8 873 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 ZFYVE19Q96K21 471 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 TSPAN18Q96SJ8 248 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SORT1Q99523 831 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 TMEM134Q9H6X4 195 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 MARCH7Q9H992 704 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 SPAG4Q9NPE6 437 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 TJP2Q9UDY2 1190 aa9.68□□□□□ -0.86
CCDC40-212ENST00000574799 PTGES3LE9PB15 166 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 SNAP91O60641 907 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 LSM8O95777 96 aaKnown RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 ALDOAP04075 364 aaKnown RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 ADORA2AP29274 412 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 CCR10P46092 362 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 MYL6P60660 151 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 RHDQ02161 417 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 SF3B4Q15427 424 aaKnown RBP eCLIP9.67□□□□□ -0.861e-7■■■■□ 25.6
CCDC40-212ENST00000574799 MAPRE1Q15691 268 aaKnown RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 C15orf59Q2T9L4 293 aaPredicted RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 ATG14Q6ZNE5 492 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 USP50Q70EL3 339 aaPredicted RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 SFRP1Q8N474 314 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 LRRC71Q8N4P6 559 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 ZNF420Q8TAQ5 688 aaPredicted RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 ASB9Q96DX5 294 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 ZNF597Q96LX8 424 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 HEXIM2Q96MH2 286 aaKnown RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 SEPHS2Q99611 448 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 ACO2Q99798 780 aaKnown RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 RNF38Q9H0F5 515 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 XYLT2Q9H1B5 865 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 GBA3Q9H227 469 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 SPON1Q9HCB6 807 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 GJD2Q9UKL4 321 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 RAP2CQ9Y3L5 183 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 CORINQ9Y5Q5 1042 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 CDH23Q9H251 3354 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 FAM47E-STBD1D6RA91 191 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 H0YCG3 227 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 EIF2S1P05198 315 aaKnown RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 HOXC6P09630 235 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 TGFB3P10600 412 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 HOXD11P31277 338 aaPredicted RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 L1CAMP32004 1257 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 STAT5BP51692 787 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 PRKCQQ04759 706 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 DLG2Q15700 870 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 ANKRD26P1Q6NSI1 321 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 CRTC3Q6UUV7 619 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 LYSMD3Q7Z3D4 306 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 SLCO6A1Q86UG4 719 aa9.67□□□□□ -0.86
CCDC40-212ENST00000574799 CAND1Q86VP6 1230 aaKnown RBP9.67□□□□□ -0.86
CCDC40-212ENST00000574799 CARM1Q86X55 608 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms