RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CSF2P04141 144 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 UNGP13051 313 aaPredicted RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 NME1P15531 152 aaKnown RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 TGM2P21980 687 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 IGFALSP35858 605 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 PTPN9P43378 593 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 PDX1P52945 283 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 GSCP56915 257 aaPredicted RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 SNX16P57768 344 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 PFN3P60673 137 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 RPS21P63220 83 aaKnown RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 SKOR1P84550 965 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 E2F1Q01094 437 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 CDO1Q16878 200 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 ACBD5Q5T8D3 534 aaPredicted RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 CDKAL1Q5VV42 579 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 KIAA1161Q6NSJ0 714 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 LEKR1Q6ZMV7 388 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 NYAP1Q6ZVC0 841 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 PTAR1Q7Z6K3 402 aaPredicted RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 FAM114A1Q8IWE2 563 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 SPACA3Q8IXA5 215 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 PYROXD2Q8N2H3 581 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 NETO2Q8NC67 525 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 ZNF548Q8NEK5 533 aaPredicted RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 MYRIPQ8NFW9 859 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 SLC30A5Q8TAD4 765 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 ASB12Q8WXK4 309 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 FGF11Q92914 225 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 FUBP1Q96AE4 644 aaKnown RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 CENPTQ96BT3 561 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 CCDC114Q96M63 670 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 UBL7Q96S82 380 aaPredicted RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 ASCL3Q9NQ33 180 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 TAB2Q9NYJ8 693 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 HECAQ9UBI9 543 aaPredicted RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 OR12D3Q9UGF7 316 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 DNAI1Q9UI46 699 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 INSIG1O15503 277 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 TSPAN6O43657 245 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 KDELR3O43731 214 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 GCATO75600 419 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 GSRP00390 522 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 MPOP05164 745 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 GP1BAP07359 652 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 RHOQP17081 205 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 EEF1GP26641 437 aaKnown RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 RFC1P35251 1148 aaPredicted RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 SOX5P35711 763 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 RECQLP46063 649 aaPredicted RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 RABIFP47224 123 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 MAPKAPK2P49137 400 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 DNA2P51530 1060 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 HNRNPKP61978 463 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS53-213ENST00000572334 DAB2P98082 770 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 CDR2Q01850 454 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 KRT31Q15323 416 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 SYCP1Q15431 976 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 TPD52L1Q16890 204 aaPredicted RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 MYLK3Q32MK0 819 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 ZNF805Q5CZA5 627 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 LRRC73Q5JTD7 316 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 PERM1Q5SV97 790 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 PPP1R15BQ5SWA1 713 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 ATXN7L2Q5T6C5 722 aaPredicted RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 KCTD16Q68DU8 428 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 RETSATQ6NUM9 610 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 GUSBP11Q6P575 273 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 WDR59Q6PJI9 974 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 RBM43Q6ZSC3 357 aaKnown RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 STRADAQ7RTN6 431 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 APTXQ7Z2E3 356 aaKnown RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 PARGQ86W56 976 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 ZNF677Q86XU0 584 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 DCP2Q8IU60 420 aaKnown RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 RBFAQ8N0V3 343 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 TP53I13Q8NBR0 393 aaPredicted RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 DENND6BQ8NEG7 585 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 OR2AP1Q8NGE2 309 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 FAM174AQ8TBP5 190 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 ENOX1Q8TC92 643 aaKnown RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 IFI44Q8TCB0 444 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 SLC39A7Q92504 469 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 NTAN1Q96AB6 310 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 PPP1R16AQ96I34 528 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 FEM1CQ96JP0 617 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 NSMCE3Q96MG7 304 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 FCRL3Q96P31 734 aaPredicted RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 C11orf70Q9BRQ4 267 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 BOCQ9BWV1 1114 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 CLPBQ9H078 707 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 MAGEH1Q9H213 219 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 VPS16Q9H269 839 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 HSD3B7Q9H2F3 369 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 RETREG1Q9H6L5 497 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 ZDHHC6Q9H6R6 413 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 DYRK4Q9NR20 520 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 MBNL1Q9NR56 388 aaKnown RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 TMEM51Q9NW97 253 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 DNAJC28Q9NX36 388 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms