RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 LZTR1Q8N653 840 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 SAP25Q8TEE9 199 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 TEKT4Q8WW24 435 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 ARHGEF26Q96DR7 871 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 KLHL32Q96NJ5 620 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 LHX3Q9UBR4 397 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 H3BRJ5 948 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 TSPAN6O43657 245 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 FTH1P19P0C7X4 201 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 RARAP10276 462 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 SLC18A3Q16572 532 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 SMTNL2Q2TAL5 461 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 ASTE1Q2TB18 679 aaPredicted RBP20.57■□□□□ 0.88
CLK3-225ENST00000569063 INAVAQ3KP66 663 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 POLNQ7Z5Q5 900 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 RAB44Q7Z6P3 723 aaPredicted RBP20.57■□□□□ 0.88
CLK3-225ENST00000569063 VSTM4Q8IW00 320 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 NPWQ8N729 165 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 NETO2Q8NC67 525 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 KLHDC7BQ96G42 594 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 BTBD6Q96KE9 485 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 SCNM1Q9BWG6 230 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 SLC17A9Q9BYT1 436 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 DKK3Q9UBP4 350 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 APOBEC2Q9Y235 224 aaKnown RBP20.57■□□□□ 0.88
CLK3-225ENST00000569063 CA5BQ9Y2D0 317 aa20.57■□□□□ 0.88
CLK3-225ENST00000569063 TP53BP1Q12888 1972 aaPredicted RBP20.56■□□□□ 0.88
CLK3-225ENST00000569063 MYO1FO00160 1098 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 SPINK2P20155 84 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 ARL4AP40617 200 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 ABL2P42684 1182 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 SLC25A11Q02978 314 aaKnown RBP20.56■□□□□ 0.88
CLK3-225ENST00000569063 MAPK8IP2Q13387 824 aaPredicted RBP20.56■□□□□ 0.88
CLK3-225ENST00000569063 FGL2Q14314 439 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 GRM3Q14832 879 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 TXNRD3NBQ6F5E7 133 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 TTC7BQ86TV6 843 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 RNF214Q8ND24 703 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 FAM174AQ8TBP5 190 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 HCAR2Q8TDS4 363 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 ADAMTS14Q8WXS8 1223 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 HSPH1Q92598 858 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 C1QTNF2Q9BXJ5 285 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 FZD3Q9NPG1 666 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLK3-225ENST00000569063 NEUROG3Q9Y4Z2 214 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 HS3ST3A1Q9Y663 406 aa20.56■□□□□ 0.88
CLK3-225ENST00000569063 DOCK9Q9BZ29 2069 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 SSU72P8A0A1W2PR75 194 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 AREL1O15033 823 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 INSIG1O15503 277 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 SPINT1O43278 529 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 HYAL3O43820 417 aaPredicted RBP20.55■□□□□ 0.88
CLK3-225ENST00000569063 PAK4O96013 591 aaPredicted RBP20.55■□□□□ 0.88
CLK3-225ENST00000569063 ITGAVP06756 1048 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 THEGLP0DJG4 465 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 EPHA8P29322 1005 aaPredicted RBP20.55■□□□□ 0.88
CLK3-225ENST00000569063 CSNK1DP48730 415 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 IL10RBQ08334 325 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 RFTN1Q14699 578 aaPredicted RBP20.55■□□□□ 0.88
CLK3-225ENST00000569063 ABI3BPQ7Z7G0 1075 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 SLCO6A1Q86UG4 719 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 GATAD2AQ86YP4 633 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 ASB12Q8WXK4 309 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 EXOC2Q96KP1 924 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 LENG8Q96PV6 779 aaPredicted RBP20.55■□□□□ 0.88
CLK3-225ENST00000569063 CSPG4P5Q96PW8 444 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 MYOCQ99972 504 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 ZNHIT6Q9NWK9 470 aaKnown RBP20.55■□□□□ 0.88
CLK3-225ENST00000569063 TOR4AQ9NXH8 423 aa20.55■□□□□ 0.88
CLK3-225ENST00000569063 FAM221BA6H8Z2 402 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 DFFAO00273 331 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 NEMP1O14524 444 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 TNFSF14O43557 240 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 PALMO75781 387 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 DKK1O94907 266 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 TPM1P09493 284 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 GCNT7Q6ZNI0 430 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 CHCHD4Q8N4Q1 142 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 ZNF564Q8TBZ8 553 aaPredicted RBP20.54■□□□□ 0.88
CLK3-225ENST00000569063 BMFQ96LC9 184 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 TUBGCP5Q96RT8 1024 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 ABHD10Q9NUJ1 306 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 UVRAGQ9P2Y5 699 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 GGT7Q9UJ14 662 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 ITM2BQ9Y287 266 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 KNL1Q8NG31 2342 aa20.54■□□□□ 0.88
CLK3-225ENST00000569063 IGLON5A6NGN9 336 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 H2AFZP0C0S5 128 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 ATXN1LP0C7T5 689 aaKnown RBP20.53■□□□□ 0.88
CLK3-225ENST00000569063 TIMP2P16035 220 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 AMPD1P23109 780 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 SUOXP51687 545 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 CLDN2P57739 230 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 NSUN2Q08J23 767 aaKnown RBP eCLIP20.53■□□□□ 0.88
CLK3-225ENST00000569063 BNIP3Q12983 259 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 SGCGQ13326 291 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 TSR1Q2NL82 804 aaKnown RBP20.53■□□□□ 0.88
CLK3-225ENST00000569063 TMCO3Q6UWJ1 677 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 ARHGAP36Q6ZRI8 547 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms