RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 LBRQ14739 615 aaKnown RBP9.93□□□□□ -0.82
CLK3-220ENST00000567992 ZNF805Q5CZA5 627 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 TRIM61Q5EBN2 209 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 SYCP2LQ5T4T6 812 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 SPOCD1Q6ZMY3 1216 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 DAAM2Q86T65 1068 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 TRIM69Q86WT6 500 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 ZSWIM9Q86XI8 627 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 LRRC8AQ8IWT6 810 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 RYBPQ8N488 228 aaPredicted RBP9.93□□□□□ -0.82
CLK3-220ENST00000567992 TEX26Q8N6G2 289 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 CCDC112Q8NEF3 446 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 MAML1Q92585 1016 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 FATE1Q969F0 183 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 RNF25Q96BH1 459 aaPredicted RBP9.93□□□□□ -0.82
CLK3-220ENST00000567992 PPP1R16AQ96I34 528 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 KLHL32Q96NJ5 620 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 MGME1Q9BQP7 344 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 HERPUD2Q9BSE4 406 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 CINPQ9BW66 212 aaPredicted RBP9.93□□□□□ -0.82
CLK3-220ENST00000567992 OSBPL1AQ9BXW6 950 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 CPEB1Q9BZB8 566 aaKnown RBP9.93□□□□□ -0.82
CLK3-220ENST00000567992 KDM4CQ9H3R0 1056 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 PREBQ9HCU5 417 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 FSCN3Q9NQT6 498 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 EIF2B4Q9UI10 523 aaKnown RBP9.93□□□□□ -0.82
CLK3-220ENST00000567992 CAPN6Q9Y6Q1 641 aa9.93□□□□□ -0.82
CLK3-220ENST00000567992 hCG_1818297A0A087WSY0 165 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 A0A1B0GTW7 788 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 A0A1W2PPC4 97 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 MACROD2A1Z1Q3 448 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 C16orf96A6NNT2 1141 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 WNT9AO14904 365 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 AREL1O15033 823 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 KHNYNO15037 678 aaKnown RBP9.92□□□□□ -0.82
CLK3-220ENST00000567992 SERPINF2P08697 491 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 KRT10P13645 584 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 CTNNA2P26232 953 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 CD27P26842 260 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 PEX5P50542 639 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 NEK3P51956 506 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 IRX4P78413 519 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 PPIDQ08752 370 aaKnown RBP9.92□□□□□ -0.82
CLK3-220ENST00000567992 NSUN2Q08J23 767 aaKnown RBP eCLIP9.92□□□□□ -0.82
CLK3-220ENST00000567992 KIF5AQ12840 1032 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 IHHQ14623 411 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 DUOXA1Q1HG43 343 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 TMEM259Q4ZIN3 620 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 ZFYVE27Q5T4F4 411 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 NPNTQ6UXI9 565 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 GDPD4Q6W3E5 623 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 SRLQ86TD4 932 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 NT5DC3Q86UY8 548 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 LRRC49Q8IUZ0 686 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 RGL4Q8IZJ4 473 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 EXD1Q8NHP7 514 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 CEP76Q8TAP6 659 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 SNX19Q92543 992 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 ALG3Q92685 438 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 HDAC11Q96DB2 347 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 ECHDC3Q96DC8 303 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 SLC6A18Q96N87 628 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 TSGA13Q96PP4 275 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 DYRK4Q9NR20 520 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 DKK3Q9UBP4 350 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 SUSD2Q9UGT4 822 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 SEPT3Q9UH03 358 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 GGT7Q9UJ14 662 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 ZFR2Q9UPR6 939 aaKnown RBP9.92□□□□□ -0.82
CLK3-220ENST00000567992 ITM2BQ9Y287 266 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 PCDHA3Q9Y5H8 950 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 FADS3Q9Y5Q0 445 aa9.92□□□□□ -0.82
CLK3-220ENST00000567992 TBC1D3DA0A087WVF3 549 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 TBC1D3IA0A087WXS9 549 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 TBC1D3EA0A087X179 549 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 TBC1D3KA0A087X1G2 549 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 TTC24A2A3L6 582 aaPredicted RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 TBC1D3FA6NER0 549 aaPredicted RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 TBC1D3LB9A6J9 549 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 TRAFD1O14545 582 aaPredicted RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 CDX4O14627 284 aaPredicted RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 APOL1O14791 398 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 BCAT2O15382 392 aaPredicted RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 AP1G1O43747 822 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 FOXD2O60548 495 aaPredicted RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 RNGTTO60942 597 aaKnown RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 CFIP05156 583 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 TBC1D3HP0C7X1 549 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 PECAM1P16284 738 aaPredicted RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 ENGP17813 658 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 ITIH2P19823 946 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 CCNCP24863 283 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 HSPA9P38646 679 aaKnown RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 MMP13P45452 471 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 LIMK1P53667 647 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 MAXP61244 160 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 AP1S1P61966 158 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 HNRNPDQ14103 355 aaKnown RBP9.91□□□□□ -0.82
CLK3-220ENST00000567992 ZNF235Q14590 738 aa9.91□□□□□ -0.82
CLK3-220ENST00000567992 LLGL1Q15334 1064 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms