RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ZNF548Q8NEK5 533 aaPredicted RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 FAM172AQ8WUF8 416 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 CENPIQ92674 756 aaPredicted RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 ISG20Q96AZ6 181 aaKnown RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 TBC1D31Q96DN5 1066 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 C1QTNF2Q9BXJ5 285 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 KLC2Q9H0B6 622 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 NOL6Q9H6R4 1146 aaKnown RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 RTN4Q9NQC3 1192 aaKnown RBP11.82□□□□□ -0.52
USP3-220ENST00000561381 FANCLQ9NW38 375 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 NLGN3Q9NZ94 848 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 SIK3Q9Y2K2 1263 aa11.82□□□□□ -0.52
USP3-220ENST00000561381 IGSF10Q6WRI0 2623 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 PTPRQQ9UMZ3 2332 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 SPTY2D1-AS1A0A0U1RR47 76 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 NEMP1O14524 444 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 RAMP2O60895 175 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 CSF2P04141 144 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 KRT3P12035 628 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 NME1P15531 152 aaKnown RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 ITIH2P19823 946 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 ETFBP38117 255 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 STAT1P42224 750 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 PTPN9P43378 593 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 HNRNPKP61978 463 aaKnown RBP eCLIP11.81□□□□□ -0.52
USP3-220ENST00000561381 EIF2B5Q13144 721 aaKnown RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 SGCGQ13326 291 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 PDE1CQ14123 709 aaPredicted RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 POLD3Q15054 466 aaPredicted RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 MYLK3Q32MK0 819 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 CDCP2Q5VXM1 449 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 WDR59Q6PJI9 974 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 TRIM72Q6ZMU5 477 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 PARGQ86W56 976 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 DCP2Q8IU60 420 aaKnown RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 OR2AP1Q8NGE2 309 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 SNIP1Q8TAD8 396 aaKnown RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 FGF11Q92914 225 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 IFT43Q96FT9 208 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 KLHL32Q96NJ5 620 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 LENG8Q96PV6 779 aaPredicted RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 MAGEH1Q9H213 219 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 TCEAL2Q9H3H9 227 aaPredicted RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 LMBRD1Q9NUN5 540 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 ADAM22Q9P0K1 906 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 PNMA8BQ9ULN7 279 aaPredicted RBP11.81□□□□□ -0.52
USP3-220ENST00000561381 HPCAL4Q9UM19 191 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 SHROOM3Q8TF72 1996 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 BPTFQ12830 3046 aa11.81□□□□□ -0.52
USP3-220ENST00000561381 TCRBV5S1A1TA0A578 114 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 NEMP2A6NFY4 417 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 FPGTO14772 594 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 AREL1O15033 823 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 TSPAN6O43657 245 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 BUB1O43683 1085 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 KDELR3O43731 214 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 MMP20O60882 483 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 TMCC1O94876 653 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 POP4O95707 220 aaKnown RBP11.8□□□□□ -0.52
USP3-220ENST00000561381 GSRP00390 522 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 PRB1P04280 392 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 MPOP05164 745 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 ALPPL2P10696 532 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 GPD1P21695 349 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 NSFP46459 744 aaKnown RBP11.8□□□□□ -0.52
USP3-220ENST00000561381 RABIFP47224 123 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 COPB1P53618 953 aaKnown RBP11.8□□□□□ -0.52
USP3-220ENST00000561381 GSCP56915 257 aaPredicted RBP11.8□□□□□ -0.52
USP3-220ENST00000561381 PFN3P60673 137 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 SNRPD1P62314 119 aaKnown RBP11.8□□□□□ -0.52
USP3-220ENST00000561381 CCDC173Q0VFZ6 552 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 SYCP1Q15431 976 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 CDKN3Q16667 212 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 CLEC16AQ2KHT3 1053 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 DEFB133Q30KQ1 61 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 TBC1D25Q3MII6 688 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 FKBP15Q5T1M5 1219 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 LRRC69Q6ZNQ3 347 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 SLFN11Q7Z7L1 901 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 RBFAQ8N0V3 343 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 FAM181AQ8N9Y4 354 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 FAM174AQ8TBP5 190 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 IFI44Q8TCB0 444 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 CENPTQ96BT3 561 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 SELENOOQ9BVL4 669 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 PRORYQ9H606 182 aa11.8□□□□□ -0.52
USP3-220ENST00000561381 IPO11Q9UI26 975 aaKnown RBP11.8□□□□□ -0.52
USP3-220ENST00000561381 SMG1Q96Q15 3661 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 CXorf51AA0A1B0GTR3 108 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 CASC3O15234 703 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 INSIG1O15503 277 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 RRP8O43159 456 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 CCP110O43303 1012 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 AQP9O43315 295 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 CSO75390 466 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 GCATO75600 419 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 JUNDP17535 347 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 TGM2P21980 687 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 EPHB2P29323 1055 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 IGFALSP35858 605 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms