RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TADA3O75528 432 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ENDOD1O94919 500 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 OAZ2O95190 189 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 PAPLNO95428 1278 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ERBB2P04626 1255 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 GLI1P08151 1106 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 PNMA6AP0CW24 399 aaPredicted RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 KRT3P12035 628 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ALADP13716 330 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 CHRNB2P17787 502 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 LAG3P18627 525 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 CYP2C18P33260 490 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 GPD2P43304 727 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 GABRB2P47870 512 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 OR1G1P47890 313 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 NOMO3P69849 1222 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 CREMQ03060 361 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 KRT17Q04695 432 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 DSC1Q08554 894 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 MBTPS1Q14703 1052 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 MYBPC3Q14896 1274 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 RAB39AQ14964 217 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 HADHQ16836 314 aaKnown RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 ODF2Q5BJF6 829 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 EFHC1Q5JVL4 640 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 RNFT1Q5M7Z0 435 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 NAA35Q5VZE5 725 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 C11orf63Q6NUN7 778 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 DNAJC24Q6P3W2 148 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 PSRC1Q6PGN9 363 aaPredicted RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 DCUN1D2Q6PH85 259 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 PEX26Q7Z412 305 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 DEFB128Q7Z7B8 93 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 LYSMD2Q8IV50 215 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 PDCL2Q8N4E4 241 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ESX1Q8N693 406 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ATG16L2Q8NAA4 619 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 FEZF2Q8TBJ5 459 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 MYCBPAPQ8TBZ2 947 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ZNF564Q8TBZ8 553 aaPredicted RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 FNIP1Q8TF40 1166 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 SLC20A1Q8WUM9 679 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 MAIP1Q8WWC4 291 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 SEC14L1Q92503 715 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 TOP1MTQ969P6 601 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 MUL1Q969V5 352 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 CEP295NLQ96MC4 621 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 CASD1Q96PB1 797 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 PCDHB18PQ96TA0 734 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 MRPL45Q9BRJ2 306 aaKnown RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 DUSP16Q9BY84 665 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ELOVL4Q9GZR5 314 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 THAP2Q9H0W7 228 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 WDCPQ9H6R7 721 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 MANSC1Q9H8J5 431 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 IL23AQ9NPF7 189 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 RRAGDQ9NQL2 400 aaPredicted RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 TBC1D13Q9NVG8 400 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 PNPOQ9NVS9 261 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ASNSD1Q9NWL6 643 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 PIH1D1Q9NWS0 290 aaKnown RBP5.3□□□□□ -1.56
LDLR-209ENST00000558528 COMMD8Q9NX08 183 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 EHD2Q9NZN4 543 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 CALCOCO1Q9P1Z2 691 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 GRHPRQ9UBQ7 328 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 ADAM28Q9UKQ2 775 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 TSPAN16Q9UKR8 245 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 SLC39A10Q9ULF5 831 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 MAFFQ9ULX9 164 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 COG5Q9UP83 839 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 RWDD3Q9Y3V2 267 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 HYOU1Q9Y4L1 999 aa5.3□□□□□ -1.56
LDLR-209ENST00000558528 SCN10AQ9Y5Y9 1956 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 MED19A0JLT2 244 aaPredicted RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 GRID2IPA4D2P6 1211 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 TRIM43BA6NCK2 446 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SIGLEC16A6NMB1 481 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 GNB5O14775 395 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 NRP1O14786 923 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 XPO1O14980 1071 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 NPC1O15118 1278 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 HOXC11O43248 304 aaPredicted RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 BUB1O43683 1085 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SPOPO43791 374 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 PALMO75781 387 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 RNF8O76064 485 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SLU7O95391 586 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 MOCS3O95396 460 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 FAM200BP0CF97 657 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 TYRP14679 529 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 RRM1P23921 792 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 MCM3P25205 808 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 RPL10P27635 214 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 AOAHP28039 575 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 RAP1GAPP47736 663 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 PAPOLAP51003 745 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 PSMC1P62191 440 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 VAMP2P63027 116 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SLC6A3Q01959 620 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 MEF2AQ02078 507 aaPredicted RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms