RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ATP9BO43861 1147 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 GLRA3O75311 464 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 USP12O75317 370 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 STC2O76061 302 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 PEX11BO96011 259 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 IL1BP01584 269 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 LRG1P02750 347 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ATP5BP06576 529 aaKnown RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 DHRS4L1P0CG22 281 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 TAC1P20366 129 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ADRA1DP25100 572 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 DNAJB1P25685 340 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 CORO1AP31146 461 aaKnown RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 KCNQ1P51787 676 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 CRADDP78560 199 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 GNA12Q03113 381 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF177Q13360 481 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 FYB2Q5VWT5 728 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ALG1LQ6GMV1 187 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 RANBP10Q6VN20 620 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 LCA5Q86VQ0 697 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 KCNMB4Q86W47 210 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 PPFIBP2Q8ND30 876 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 CALML6Q8TD86 181 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 MRPS31Q92665 395 aaKnown RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ISL2Q96A47 359 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 SERAC1Q96JX3 654 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 NUDCD1Q96RS6 583 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 SRPK1Q96SB4 655 aaKnown RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ZBED2Q9BTP6 218 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 FICDQ9BVA6 458 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 SEPT3Q9UH03 358 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 DCDC2Q9UHG0 476 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 LSM7Q9UK45 103 aaKnown RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 GRID1Q9ULK0 1009 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 STK38LQ9Y2H1 464 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 IRAK3Q9Y616 596 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF638Q14966 1978 aaKnown RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ZCWPW2A0A1B0GU75 182 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 DPPA5A6NC42 116 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 FOXO6A8MYZ6 492 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 KLF11O14901 512 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 RFPL1O75677 317 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 PAPSS2O95340 614 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 OLFM2O95897 454 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 EPOP01588 193 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 HLA-DPA1P20036 260 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 CDC25CP30307 473 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 PEX19P40855 299 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 LIMK2P53671 638 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 WNT3AP56704 352 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 RPL26P61254 145 aaKnown RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 PDE1BQ01064 536 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 MLLT1Q03111 559 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 DENND1CQ8IV53 801 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 SPATA22Q8NHS9 363 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 FAM136AQ96C01 138 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 IFT43Q96FT9 208 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 MRGPRX2Q96LB1 330 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 RBBP8Q99708 897 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 FAM167BQ9BTA0 163 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 NT5MQ9NPB1 228 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 PLLPQ9Y342 182 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 TCAF1Q9Y4C2 921 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 NVLO15381 856 aaKnown RBP12.79□□□□□ -0.36
SHMT2-229ENST00000557348 BIRC5O15392 142 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 CCDC22O60826 627 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 ITGA2BP08514 1039 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 ACRP10323 421 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 MBL2P11226 248 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-229ENST00000557348 RGS19P49795 217 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 SERPINB8P50452 374 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 OXCT1P55809 520 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 UBE3AQ05086 875 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 ITKQ08881 620 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 SLC1A5Q15758 541 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 CERCAMQ5T4B2 595 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 MROH9Q5TGP6 573 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 FAM91A1Q658Y4 838 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 ATG16L1Q676U5 607 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 KIAA0930Q6ICG6 404 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-229ENST00000557348 KDELC1Q6UW63 502 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 OTOP2Q7RTS6 562 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 CNTN4Q8IWV2 1026 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 HJURPQ8NCD3 748 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-229ENST00000557348 TADA1Q96BN2 335 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 RAD9AQ99638 391 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 TRIM4Q9C037 500 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 ATP13A1Q9HD20 1204 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 MLXIPLQ9NP71 852 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 C20orf96Q9NUD7 363 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-229ENST00000557348 UBP1Q9NZI7 540 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 NDUFA13Q9P0J0 144 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 MID2Q9UJV3 735 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 TBC1D30Q9Y2I9 924 aa12.79□□□□□ -0.36
SHMT2-229ENST00000557348 ZFP37Q9Y6Q3 630 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-229ENST00000557348 SOBPA7XYQ1 873 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 GOLGA8RI6L899 631 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 J3KR12 359 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 KDELR3O43731 214 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms