RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 A0A1B0GTQ1 180 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 ARHGAP42A6NI28 874 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 C16orf96A6NNT2 1141 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 PRAMEF26H0Y7S4 382 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 H3BRJ5 948 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 MYO1FO00160 1098 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 KRIT1O00522 736 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 AREL1O15033 823 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 INSIG1O15503 277 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 DAPK3O43293 454 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 PCDHGA12O60330 932 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 UGT2B4P06133 528 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 PRLRP16471 622 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 AMPD1P23109 780 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 IL4RP24394 825 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 ABL2P42684 1182 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 ARSEP51690 589 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 RHOAP61586 193 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 SHC2P98077 582 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 HNRNPDQ14103 355 aaKnown RBP10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 FGL2Q14314 439 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 SETMARQ53H47 684 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 FBXL19Q6PCT2 694 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 GDPD4Q6W3E5 623 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 IQCHQ86VS3 1027 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 SPATS2Q86XZ4 545 aaKnown RBP10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 ZNF564Q8TBZ8 553 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 FAM71BQ8TC56 605 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 TSC1Q92574 1164 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 HSPH1Q92598 858 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 KLK6Q92876 244 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 MS4A3Q96HJ5 214 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 GDAP1L1Q96MZ0 367 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 KLHL32Q96NJ5 620 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 CSPG4P5Q96PW8 444 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 ELF4Q99607 663 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 OSBPL1AQ9BXW6 950 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 CPEB1Q9BZB8 566 aaKnown RBP10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 PCDH18Q9HCL0 1135 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 UVRAGQ9P2Y5 699 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 DKK3Q9UBP4 350 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 PCOLCE2Q9UKZ9 415 aa10.42□□□□□ -0.74
CCDC88C-206ENST00000553437 CEP295Q9C0D2 2601 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 DOCK4Q8N1I0 1966 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 ASCC3Q8N3C0 2202 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 CEP192Q8TEP8 1941 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 SLC31A1O15431 190 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 DFNA5O60443 496 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 BUB1BO60566 1050 aaPredicted RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 PROSCO94903 275 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 PCDH8O95206 1070 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 IGSF6O95976 241 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 TOP3BO95985 862 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 PEX11BO96011 259 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 H2AFZP0C0S5 128 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 TMEM253P0C7T8 217 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 TIMP2P16035 220 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 PI4KAP42356 2102 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 RGRP47804 291 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 CCT8P50990 548 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 SIM1P81133 766 aaPredicted RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 OVGP1Q12889 678 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 COL9A2Q14055 689 aaPredicted RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 TRIP6Q15654 476 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 ATP13A4Q4VNC1 1196 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 SLC45A4Q5BKX6 768 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 H2AFVQ71UI9 128 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 GLRX5Q86SX6 157 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 LZTR1Q8N653 840 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 RAB7BQ96AH8 199 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 SKA1Q96BD8 255 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 FEM1CQ96JP0 617 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 EXOC2Q96KP1 924 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 C1QTNF2Q9BXJ5 285 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 ERVMER34-1Q9H9K5 563 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 NHEJ1Q9H9Q4 299 aaPredicted RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 GDF3Q9NR23 364 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 SPTLC3Q9NUV7 552 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 ZNHIT6Q9NWK9 470 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 CTTNBP2NLQ9P2B4 639 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 IPO11Q9UI26 975 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 GGT7Q9UJ14 662 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 BTBD3Q9Y2F9 522 aa10.41□□□□□ -0.74
CCDC88C-206ENST00000553437 TSPAN11A1L157 253 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 AKR1B15C9JRZ8 316 aaPredicted RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 DFFAO00273 331 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 MUSKO15146 869 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 RAD51BO15315 384 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 FLRT2O43155 660 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 TSPAN6O43657 245 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 AKR1B10O60218 316 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 PALMO75781 387 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 CD48P09326 243 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 TPM1P09493 284 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 ITIH2P19823 946 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 HNRNPA2B1P22626 353 aaKnown RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 ARL4AP40617 200 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 RXRGP48443 463 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 CSNK1DP48730 415 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms