RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, human

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-208	ENST00000551691	PRKCH	P24723	683 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	EPHA3	P29320	983 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	CD6	P30203	668 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	NPTX2	P47972	431 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	DGKE	P52429	567 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	CHN2	P52757	468 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	SEC24C	P53992	1094 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	PNLIPRP1	P54315	467 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ARHGAP8	P85298	464 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	HHEX	Q03014	270 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	HGFAC	Q04756	655 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ABHD18	Q0P651	414 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	MYO1E	Q12965	1108 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	MPP3	Q13368	585 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	BFSP2	Q13515	415 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	CBFB	Q13951	182 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	NFYC	Q13952	458 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	CCNI	Q14094	377 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	SMAD1	Q15797	465 aa	Known RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	TBRG1	Q3YBR2	411 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	NOMO2	Q5JPE7	1267 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	WDR45B	Q5MNZ6	344 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ZNF618	Q5T7W0	954 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	TTC22	Q5TAA0	569 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ABLIM2	Q6H8Q1	611 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	SNRNP48	Q6IEG0	339 aa	Known RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	RGS7BP	Q6MZT1	257 aa	Predicted RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	TAF2	Q6P1X5	1199 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	SYCE2	Q6PIF2	218 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	KLHL24	Q6TFL4	600 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	CLEC9A	Q6UXN8	241 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691		Q6ZSN1	163 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	PPP1R32	Q7Z5V6	425 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ADGRE4P	Q86SQ3	457 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ZNF280B	Q86YH2	543 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	P3H2	Q8IVL5	708 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	C1orf210	Q8IVY1	113 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	FBXO16	Q8IX29	292 aa	Predicted RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ANKRD35	Q8N283	1001 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ZNF808	Q8N4W9	903 aa	Predicted RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	TMEM171	Q8WVE6	324 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	NEU4	Q8WWR8	484 aa	Predicted RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ST8SIA2	Q92186	375 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	TOP1MT	Q969P6	601 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	KIF1BP	Q96EK5	621 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	NUDT22	Q9BRQ3	303 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	MTG1	Q9BT17	334 aa	Predicted RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	PTDSS2	Q9BVG9	487 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	IKZF4	Q9H2S9	585 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	RNPEP	Q9H4A4	650 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	PRKRIP1	Q9H875	184 aa	Predicted RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	RAVER2	Q9HCJ3	691 aa	Known RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	DIAPH3	Q9NSV4	1193 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ALKBH4	Q9NXW9	302 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	FAM30A	Q9NZY2	134 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	HMG20B	Q9P0W2	317 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	OAZ3	Q9UMX2	235 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	CNTN6	Q9UQ52	1028 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	CAMK2A	Q9UQM7	478 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	DNAJC16	Q9Y2G8	782 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	MRPS17	Q9Y2R5	130 aa	Known RBP	4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	ZNF462	Q96JM2	2506 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691	LAMA1	P25391	3075 aa		4.05	□□□□□ -1.76
LIMA1-208	ENST00000551691		A0A1W2PRQ8	180 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	SYNDIG1L	A6NDD5	238 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	PABPN1L	A6NDY0	278 aa	Known RBP	4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	SAC3D1	A6NKF1	404 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691		F5H697	171 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	GTPBP1	O00178	669 aa	Known RBP	4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	PSMD9	O00233	223 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	MATN2	O00339	956 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	SLC30A4	O14863	429 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	CD3EAP	O15446	510 aa	Known RBP	4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	TRIAP1	O43715	76 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	RPP40	O75818	363 aa	Known RBP	4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	TSPAN9	O75954	239 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	SCGB1D1	O95968	90 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	PRB1	P04280	392 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	CNP	P09543	421 aa	Known RBP	4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	ACADM	P11310	421 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	GLUL	P15104	373 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	CD19	P15391	556 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	ATF7	P17544	494 aa	Predicted RBP	4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	CR2	P20023	1033 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	FDXR	P22570	491 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	MCC	P23508	829 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	ABCD3	P28288	659 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	NTSR1	P30989	418 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	GATM	P50440	423 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	CCR5	P51681	352 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	TERF1	P54274	439 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	SNX16	P57768	344 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	GSTO1	P78417	241 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	MAMLD1	Q13495	774 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	CUL4A	Q13619	759 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	SEC23B	Q15437	767 aa		4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	ELAVL1	Q15717	326 aa	Known RBP	4.04	□□□□□ -1.76
LIMA1-208	ENST00000551691	MEA1	Q16626	185 aa		4.04	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms