RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 PCDHA11Q9Y5I1 949 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 SPEGQ15772 3267 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 NLRC5Q86WI3 1866 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 BCLAF3A2AJT9 711 aaKnown RBP11.24□□□□□ -0.61
LINC00661-204ENST00000549354 KLHL33A6NCF5 533 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 TRDMT1O14717 391 aaKnown RBP11.24□□□□□ -0.61
LINC00661-204ENST00000549354 FKBP6O75344 327 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 B3GAT3O94766 335 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 COX4I1P13073 169 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 ALDH1A3P47895 512 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 TKTL1P51854 596 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 ARPP19P56211 112 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 RALGDSQ12967 914 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 GPNMBQ14956 572 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 CLLU1OSQ5K130 101 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 ARHGAP36Q6ZRI8 547 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 BEND5Q7L4P6 421 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 KCTD4Q8WVF5 259 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 COPG2Q9UBF2 871 aa11.24□□□□□ -0.61
LINC00661-204ENST00000549354 PTPRDP23468 1912 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 DNAJA2O60884 412 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 VAPBO95292 243 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 SERPINE1P05121 402 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 SELPP16109 830 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 ZFXP17010 805 aaPredicted RBP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 XRCC1P18887 633 aaPredicted RBP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 AOC1P19801 751 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 AIF1P55008 147 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 INHBCP55103 352 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 ABCE1P61221 599 aaKnown RBP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 GSTA3Q16772 222 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 TFAP2DQ7Z6R9 452 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 COLGALT2Q8IYK4 626 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 ZNF567Q8N184 647 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 CYP2S1Q96SQ9 504 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 VCX3BQ9H321 246 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 PREBQ9HCU5 417 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 VCX3AQ9NNX9 186 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 RRN3Q9NYV6 651 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 UBAP1Q9NZ09 502 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 EEF2KO00418 725 aaKnown RBP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 ZBTB24O43167 697 aaPredicted RBP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 KLHL2O95198 593 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 BRCC3P46736 316 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 NR2C2P49116 596 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 THOP1P52888 689 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 FLOT2Q14254 428 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 MAPRE1Q15691 268 aaKnown RBP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 ACAD11Q709F0 780 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 FAM126BQ8IXS8 530 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 SNRNP27Q8WVK2 155 aaKnown RBP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 CMTM5Q96DZ9 223 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 LRGUKQ96M69 825 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 PCDHAC1Q9H158 963 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 DMAP1Q9NPF5 467 aaPredicted RBP11.23□□□□□ -0.61
LINC00661-204ENST00000549354 SNX15Q9NRS6 342 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 ZNF180Q9UJW8 692 aa11.23□□□□□ -0.61
LINC00661-204ENST00000549354 NUP214P35658 2090 aaPredicted RBP11.22□□□□□ -0.61
LINC00661-204ENST00000549354 NRP1O14786 923 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 MSI1O43347 362 aaKnown RBP11.22□□□□□ -0.61
LINC00661-204ENST00000549354 FOXD2O60548 495 aaPredicted RBP11.22□□□□□ -0.61
LINC00661-204ENST00000549354 CES1P23141 567 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 USP46P62068 366 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 MPP1Q00013 466 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 GLB1LQ6UWU2 654 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 LRRC8DQ7L1W4 858 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 TMC7Q7Z402 723 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 SLC41A1Q8IVJ1 513 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 CRIPAKQ8N1N5 446 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 PAF1Q8N7H5 531 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 NAT16Q8N8M0 369 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 BHMTQ93088 406 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 MYLPFQ96A32 169 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 RCN3Q96D15 328 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 RUVBL2Q9Y230 463 aaKnown RBP11.22□□□□□ -0.61
LINC00661-204ENST00000549354 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.22□□□□□ -0.61
LINC00661-204ENST00000549354 AURKAO14965 403 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 B4GALT3O60512 393 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 GLRA3O75311 464 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 DDHD2O94830 711 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 CLPTM1O96005 669 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 MAGEA6P43360 314 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 CHN2P52757 468 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 CDH13P55290 713 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 COG7P83436 770 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 SCAPQ12770 1279 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 KLF10Q13118 480 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 GPRIN1Q7Z2K8 1008 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 AMIGO2Q86SJ2 522 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 FBXW8Q8N3Y1 598 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 TDRD5Q8NAT2 981 aaKnown RBP11.22□□□□□ -0.61
LINC00661-204ENST00000549354 RNF139Q8WU17 664 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 NTAN1Q96AB6 310 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 DCUN1D1Q96GG9 259 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 ULBP1Q9BZM6 244 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 PAK6Q9NQU5 681 aaPredicted RBP11.22□□□□□ -0.61
LINC00661-204ENST00000549354 PIGVQ9NUD9 493 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 TMEM161AQ9NX61 479 aa11.22□□□□□ -0.61
LINC00661-204ENST00000549354 CCDC167Q9P0B6 97 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms