RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.99□□□□□ -0.499e-8■■■■□ 23.7
HDAC4-216ENST00000544989 CWC15Q9P013 229 aaKnown RBP11.99□□□□□ -0.49
HDAC4-216ENST00000544989 DKK3Q9UBP4 350 aa11.99□□□□□ -0.49
HDAC4-216ENST00000544989 NENFQ9UMX5 172 aa11.99□□□□□ -0.49
HDAC4-216ENST00000544989 SNX11Q9Y5W9 270 aa11.99□□□□□ -0.49
HDAC4-216ENST00000544989 FLNBO75369 2602 aaKnown RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 CABIN1Q9Y6J0 2220 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 A0A1W2PQU0 124 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 A0A1W2PR77 199 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 C16orf96A6NNT2 1141 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 TLR4O00206 839 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 PLK4O00444 970 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 NEMP1O14524 444 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 PALMO75781 387 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 KRT7P08729 469 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 HNRNPA2B1P22626 353 aaKnown RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 MAN1A1P33908 653 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 HSPA9P38646 679 aaKnown RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 ARHGAP25P42331 645 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 CSNK1DP48730 415 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 PAPOLAP51003 745 aaKnown RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 TAS2R38P59533 333 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 SHC2P98077 582 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 BNC1Q01954 994 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 IL10RBQ08334 325 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 KRT81Q14533 505 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 ASTE1Q2TB18 679 aaPredicted RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 GDPD4Q6W3E5 623 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 DBX2Q6ZNG2 339 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 POLNQ7Z5Q5 900 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 DCP2Q8IU60 420 aaKnown RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 RHOT2Q8IXI1 618 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 BBS5Q8N3I7 341 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 NSMCE1Q8WV22 266 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 ASB12Q8WXK4 309 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 HSPH1Q92598 858 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 ZNF641Q96N77 438 aaPredicted RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 TUBGCP5Q96RT8 1024 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 ELF4Q99607 663 aaPredicted RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 SLC39A8Q9C0K1 460 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 SP110Q9HB58 689 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 HAUS2Q9NVX0 235 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 ANGPTL2Q9UKU9 493 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 INTUQ9ULD6 942 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 FNDC3AQ9Y2H6 1198 aaKnown RBP11.98□□□□□ -0.49
HDAC4-216ENST00000544989 FADS3Q9Y5Q0 445 aa11.98□□□□□ -0.49
HDAC4-216ENST00000544989 DFFAO00273 331 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 PROSCO94903 275 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 UGT2B4P06133 528 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 RARAP10276 462 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 XPAP23025 273 aaPredicted RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 IL1R2P27930 398 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 PMLP29590 882 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 MAT2AP31153 395 aaKnown RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 GRK6P43250 576 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 SSR1P43307 286 aaKnown RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 NXPH1P58417 271 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 SLC25A11Q02978 314 aaKnown RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 NSUN2Q08J23 767 aaKnown RBP eCLIP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 ELP6Q0PNE2 266 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 SGCGQ13326 291 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 PDK2Q15119 407 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 TRIP6Q15654 476 aaKnown RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 SMTNL2Q2TAL5 461 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 ZNF284Q2VY69 593 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 TMEM259Q4ZIN3 620 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 KCNT1Q5JUK3 1230 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 CFAP58Q5T655 872 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 BRAT1Q6PJG6 821 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 PARS2Q7L3T8 475 aaKnown RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 GLRX5Q86SX6 157 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 OR2I1PQ8NGU4 316 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 SETD7Q8WTS6 366 aaKnown RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 CELF6Q96J87 481 aaKnown RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 CSPG4P5Q96PW8 444 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 CINPQ9BW66 212 aaPredicted RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 C1QTNF7Q9BXJ2 289 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 ATP13A3Q9H7F0 1226 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 NHEJ1Q9H9Q4 299 aaPredicted RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 EBF2Q9HAK2 575 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 PDFQ9HBH1 243 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 LUC7LQ9NQ29 371 aaKnown RBP11.97□□□□□ -0.49
HDAC4-216ENST00000544989 SEPT3Q9UH03 358 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 HS3ST3A1Q9Y663 406 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 AKAP13Q12802 2813 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 ADAMTS9Q9P2N4 1935 aa11.97□□□□□ -0.49
HDAC4-216ENST00000544989 A0A1B0GTQ1 180 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 H0Y8X5 98 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 SH3BP5O60239 455 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 NFKBIAP25963 317 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 RXRGP48443 463 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 ADKP55263 362 aaKnown RBP11.96□□□□□ -0.49
HDAC4-216ENST00000544989 CDH6P55285 790 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 SIM1P81133 766 aaPredicted RBP11.96□□□□□ -0.49
HDAC4-216ENST00000544989 CYTH1Q15438 398 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 RALGPS1Q5JS13 557 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 ATXN7L2Q5T6C5 722 aaPredicted RBP11.96□□□□□ -0.49
HDAC4-216ENST00000544989 LEKR1Q6ZMV7 388 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 TTC7BQ86TV6 843 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 ARHGAP12Q8IWW6 846 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms