RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ARHGEF2Q92974 986 aaKnown RBP15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 LENG8Q96PV6 779 aaPredicted RBP15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 DUSP23Q9BVJ7 150 aa15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 KLC2Q9H0B6 622 aa15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 ABCG4Q9H172 646 aa15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 PDCL3Q9H2J4 239 aa15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 NDST4Q9H3R1 872 aa15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 NOL6Q9H6R4 1146 aaKnown RBP15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 SSUH2Q9Y2M2 353 aa15.71■□□□□ 0.11
CLSTN3-213ENST00000541953 MYO18BQ8IUG5 2567 aa15.71■□□□□ 0.1
CLSTN3-213ENST00000541953 EME2A4GXA9 379 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 NEMP2A6NFY4 417 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 ERVH48-1M5A8F1 160 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 FPGTO14772 594 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 AREL1O15033 823 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 MUSKO15146 869 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 PRKCSHP14314 528 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 CHRNB2P17787 502 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 KLK7P49862 253 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 TMPRSS3P57727 454 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 ERVPABLB-1P60509 514 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 CCDC15Q0P6D6 951 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 CCDC14Q49A88 953 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 KIAA1614Q5VZ46 1190 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 ZNF605Q86T29 641 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 VPS36Q86VN1 386 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 DCP2Q8IU60 420 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 GPT2Q8TD30 523 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 CENPTQ96BT3 561 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 KLHL32Q96NJ5 620 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 BOCQ9BWV1 1114 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 PPARGC1AQ9UBK2 798 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 RABGEF1Q9UJ41 708 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 NOCTQ9UK39 431 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 ANKRD36A6QL64 1941 aa15.7■□□□□ 0.1
CLSTN3-213ENST00000541953 F8VZ95 297 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 KRIT1O00522 736 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 INSIG1O15503 277 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 MMP20O60882 483 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 LRIG2O94898 1065 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 UCHL3P15374 230 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 DUSP3P51452 185 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 ADKP55263 362 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 SNX16P57768 344 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 SLC20A2Q08357 652 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 TAF1BQ53T94 588 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 ZNF805Q5CZA5 627 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 PRRT3Q5FWE3 981 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 RWDD4Q6NW29 188 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 FOXR1Q6PIV2 292 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 B3GNT8Q7Z7M8 397 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 PHACTR4Q8IZ21 702 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 TP53I13Q8NBR0 393 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 OR2AP1Q8NGE2 309 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 RXFP2Q8WXD0 754 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 FUBP1Q96AE4 644 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 ISG20Q96AZ6 181 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 SLC46A1Q96NT5 459 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 TUBGCP2Q9BSJ2 902 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 USP29Q9HBJ7 922 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 OR12D3Q9UGF7 316 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 APOBEC3BQ9UH17 382 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 IPO11Q9UI26 975 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 COQ6Q9Y2Z9 468 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 PAXBP1Q9Y5B6 917 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 CSNK1G3Q9Y6M4 447 aa15.69■□□□□ 0.1
CLSTN3-213ENST00000541953 CDRT15L2A8MXV6 281 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 H3BM21 787 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 EPHB6O15197 1021 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 TSPAN6O43657 245 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 GSRP00390 522 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 TSHRP16473 764 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 ADRA1BP35368 520 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 HDAC4P56524 1084 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 BPIFB4P59827 614 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 FMO1Q01740 532 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 SRSF6Q13247 344 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 SGCGQ13326 291 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 BECN1Q14457 450 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 NR0B2Q15466 257 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 LSMEM2Q8N112 164 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 PYROXD2Q8N2H3 581 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 DENND6BQ8NEG7 585 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 SLC30A5Q8TAD4 765 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 FAM174AQ8TBP5 190 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 CCDC3Q9BQI4 270 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 WRAP53Q9BUR4 548 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 GANQ9H2C0 597 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 THSD1Q9NS62 852 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 SAMSN1Q9NSI8 373 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 TMEM248Q9NWD8 314 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 SALL4Q9UJQ4 1053 aa15.68■□□□□ 0.1
CLSTN3-213ENST00000541953 SCN8AQ9UQD0 1980 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 C2CD4BA6NLJ0 364 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 NEMP1O14524 444 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 YY2O15391 372 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 TMCC1O94876 653 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 LSM8O95777 96 aaKnown RBP15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 RHOQP17081 205 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 NRG1Q02297 640 aaPredicted RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms