RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 SRRTQ9BXP5 876 aaKnown RBP7.43□□□□□ -1.22
YBX3-209ENST00000540747 TKTL2Q9H0I9 626 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 SIK2Q9H0K1 926 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 SIX2Q9NPC8 291 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 MPP6Q9NZW5 540 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 SPASTQ9UBP0 616 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 APOBEC3BQ9UH17 382 aaKnown RBP7.43□□□□□ -1.22
YBX3-209ENST00000540747 RABGEF1Q9UJ41 708 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 ITM2BQ9Y287 266 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 ACTL7AQ9Y615 435 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 NBPF19A0A087WUL8 3843 aa7.43□□□□□ -1.22
YBX3-209ENST00000540747 SCN8AQ9UQD0 1980 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 SPENQ96T58 3664 aaKnown RBP7.42□□□□□ -1.22
YBX3-209ENST00000540747 A0A1W2PQM1 296 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 C16orf96A6NNT2 1141 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 TOR1BO14657 336 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 PLD2O14939 933 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 MUSKO15146 869 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 YY2O15391 372 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 ENDOD1O94919 500 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 GNA14O95837 355 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 ITGB2P05107 769 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 TSHRP16473 764 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 SLC9A1P19634 815 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 OR1E1P30953 314 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 SLC5A2P31639 672 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 CCKBRP32239 447 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 UGT1A5P35504 534 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 CLCN1P35523 988 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 GABRB2P47870 512 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 ADKP55263 362 aaKnown RBP7.42□□□□□ -1.22
YBX3-209ENST00000540747 YPEL5P62699 121 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 NRG1Q02297 640 aaPredicted RBP7.42□□□□□ -1.22
YBX3-209ENST00000540747 GNA12Q03113 381 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 EIF3IQ13347 325 aaKnown RBP7.42□□□□□ -1.22
YBX3-209ENST00000540747 C1orf61Q13536 156 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 STIM1Q13586 685 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 SLC25A52Q3SY17 297 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 ZNF805Q5CZA5 627 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 PRRT3Q5FWE3 981 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 RETSATQ6NUM9 610 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 MACC1Q6ZN28 852 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 NLRP14Q86W24 1093 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 ZDHHC17Q8IUH5 632 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 KYQ8NBH2 561 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 TP53I13Q8NBR0 393 aaPredicted RBP7.42□□□□□ -1.22
YBX3-209ENST00000540747 BTN2A2Q8WVV5 523 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 ARHGEF2Q92974 986 aaKnown RBP7.42□□□□□ -1.22
YBX3-209ENST00000540747 FAM81BQ96LP2 452 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 HAPLN3Q96S86 360 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 TBCBQ99426 244 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 IL12RB2Q99665 862 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 SEMA3CQ99985 751 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 CRACR2AQ9BSW2 395 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 WDCPQ9H6R7 721 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 TMEM51Q9NW97 253 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.42□□□□□ -1.22
YBX3-209ENST00000540747 PPARGC1AQ9UBK2 798 aaKnown RBP7.42□□□□□ -1.22
YBX3-209ENST00000540747 APEX2Q9UBZ4 518 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 IL17BQ9UHF5 180 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 PADI4Q9UM07 663 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 FCF1Q9Y324 198 aaKnown RBP7.42□□□□□ -1.22
YBX3-209ENST00000540747 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.42□□□□□ -1.22
YBX3-209ENST00000540747 ATP6V1DQ9Y5K8 247 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 MYO9AB2RTY4 2548 aa7.42□□□□□ -1.22
YBX3-209ENST00000540747 LRP4O75096 1905 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 UTP20O75691 2785 aaKnown RBP7.41□□□□□ -1.22
YBX3-209ENST00000540747 BICDL2A1A5D9 508 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 GTPBP10A4D1E9 387 aaKnown RBP7.41□□□□□ -1.22
YBX3-209ENST00000540747 NVLO15381 856 aaKnown RBP7.41□□□□□ -1.22
YBX3-209ENST00000540747 SUV39H1O43463 412 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 GSRP00390 522 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 F9P00740 461 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 WT1P19544 449 aaPredicted RBP7.41□□□□□ -1.22
YBX3-209ENST00000540747 GKP32189 559 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 FLT3P36888 993 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 ACVRL1P37023 503 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 RECQLP46063 649 aaPredicted RBP7.41□□□□□ -1.22
YBX3-209ENST00000540747 RPIAP49247 311 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 ZFP36L1Q07352 338 aaKnown RBP7.41□□□□□ -1.22
YBX3-209ENST00000540747 NFATC3Q12968 1075 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 SGCGQ13326 291 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 SPIDRQ14159 915 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 TGIF1Q15583 401 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 ALG11Q2TAA5 492 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 KCTD16Q68DU8 428 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 ISM2Q6H9L7 571 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 KLHL10Q6JEL2 608 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 LVRNQ6Q4G3 990 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 NYAP1Q6ZVC0 841 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 ARCQ7LC44 396 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 SLC47A2Q86VL8 602 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 DTX1Q86Y01 620 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 XYLT1Q86Y38 959 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 IRF2BP1Q8IU81 584 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 FAM71AQ8IYT1 594 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 ARL10Q8N8L6 244 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 GLMNQ92990 594 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 CCDC74AQ96AQ1 378 aa7.41□□□□□ -1.22
YBX3-209ENST00000540747 SGF29Q96ES7 293 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms