RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	CATSPERB	Q9H7T0	1116 aa		13.31	□□□□□ -0.28
SEMA4D-223	ENST00000540475	FZD3	Q9NPG1	666 aa		13.31	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SEPT11	Q9NVA2	429 aa	Known RBP	13.31	□□□□□ -0.28
SEMA4D-223	ENST00000540475	DONSON	Q9NYP3	566 aa		13.31	□□□□□ -0.28
SEMA4D-223	ENST00000540475	DKK3	Q9UBP4	350 aa		13.31	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SMG1	Q96Q15	3661 aa	Known RBP	13.31	□□□□□ -0.28
SEMA4D-223	ENST00000540475	URB1	O60287	2271 aa	Known RBP	13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ZFYVE26	Q68DK2	2539 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SPTY2D1-AS1	A0A0U1RR47	76 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	POM121B	A6NF01	834 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	TMEM191C	A6NGB0	347 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	LRRC53	A6NM62	1247 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475		A6NNZ2	444 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	RASA4B	C9J798	803 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	TRIM38	O00635	465 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	RAD51B	O15315	384 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	RASA4	O43374	803 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	PIAS2	O75928	621 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	TMCC1	O94876	653 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	GK	P32189	559 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SUOX	P51687	545 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	NDST2	P52849	883 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CLDN2	P57739	230 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CYTH1	Q15438	398 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	AFMID	Q63HM1	303 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SCYL2	Q6P3W7	929 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	DCUN1D2	Q6PH85	259 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	GDPD4	Q6W3E5	623 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475		Q6ZSR6	202 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	TMC6	Q7Z403	805 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	PSTK	Q8IV42	348 aa	Known RBP	13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	FAM181A	Q8N9Y4	354 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	MDM1	Q8TC05	714 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CENPT	Q96BT3	561 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ARHGEF26	Q96DR7	871 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ZDHHC6	Q9H6R6	413 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	PDF	Q9HBH1	243 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	GPSM3	Q9Y4H4	160 aa		13.3	□□□□□ -0.28
SEMA4D-223	ENST00000540475	COL27A1	Q8IZC6	1860 aa	Predicted RBP	13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	IGLON5	A6NGN9	336 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	KRIT1	O00522	736 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	BUB1	O43683	1085 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SIGLEC6	O43699	453 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CSF2	P04141	144 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	RABIF	P47224	123 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ZNF165	P49910	485 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	PFN3	P60673	137 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	FZD2	Q14332	565 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	FILIP1L	Q4L180	1135 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	E4F1	Q66K89	784 aa	Predicted RBP	13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	MARCH9	Q86YJ5	346 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	OR6K2	Q8NGY2	324 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	HMCES	Q96FZ2	354 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	GDAP1L1	Q96MZ0	367 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	KLHL32	Q96NJ5	620 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ISCU	Q9H1K1	167 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	HAUS4	Q9H6D7	363 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SCUBE2	Q9NQ36	999 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	UCKL1	Q9NWZ5	548 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	LHX3	Q9UBR4	397 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	LRP4	O75096	1905 aa		13.29	□□□□□ -0.28
SEMA4D-223	ENST00000540475	TSPAN11	A1L157	253 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	FAM149A	A5PLN7	773 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	DDX3X	O00571	662 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	TOR1B	O14657	336 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	RIOK3	O14730	519 aa	Known RBP	13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SCAMP1	O15126	338 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CREB3	O43889	395 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	SDC3	O75056	442 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	IGSF6	O95976	241 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	FTL	P02792	175 aa	Predicted RBP	13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	UGT2B4	P06133	528 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CKMT1A	P12532	417 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	NME1	P15531	152 aa	Known RBP	13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	TIMP2	P16035	220 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CSNK1D	P48730	415 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	HCAR3	P49019	387 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ZNF135	P52742	658 aa	Predicted RBP	13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	HNRNPK	P61978	463 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	E2F1	Q01094	437 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	RAD51	Q06609	339 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	GRM3	Q14832	879 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	RTP5	Q14D33	572 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ASIC2	Q16515	512 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ERMARD	Q5T6L9	678 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	LEKR1	Q6ZMV7	388 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	MYOC	Q99972	504 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	NCAPG	Q9BPX3	1015 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CALN1	Q9BXU9	219 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	NRSN2	Q9GZP1	204 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	NLGN3	Q9NZ94	848 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	GGT7	Q9UJ14	662 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	CSNK1G3	Q9Y6M4	447 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	ASXL3	Q9C0F0	2248 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475	BPTF	Q12830	3046 aa		13.28	□□□□□ -0.28
SEMA4D-223	ENST00000540475		A0A087WV48	116 aa		13.27	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms